RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 UPF1Q92900 1129 aaKnown RBP eCLIP22.92■■□□□ 1.263e-15■■■■■ 66.8
SDC1-203ENST00000403076 TBC1D2BQ9UPU7 963 aa22.92■■□□□ 1.26
SDC1-203ENST00000403076 MAP3K2Q9Y2U5 619 aa22.92■■□□□ 1.26
SDC1-203ENST00000403076 RGPD3A6NKT7 1758 aaPredicted RBP22.92■■□□□ 1.26
SDC1-203ENST00000403076 RGPD4Q7Z3J3 1758 aa22.92■■□□□ 1.26
SDC1-203ENST00000403076 PLBD2Q8NHP8 589 aa22.92■■□□□ 1.26
SDC1-203ENST00000403076 ZBTB3Q9H5J0 574 aa22.92■■□□□ 1.26
SDC1-203ENST00000403076 COL15A1P39059 1388 aa22.91■■□□□ 1.26
SDC1-203ENST00000403076 RLBP1P12271 317 aa22.91■■□□□ 1.26
SDC1-203ENST00000403076 PHF14O94880 888 aa22.9■■□□□ 1.26
SDC1-203ENST00000403076 SMIM5Q71RC9 77 aa22.9■■□□□ 1.26
SDC1-203ENST00000403076 RREB1Q92766 1687 aa22.9■■□□□ 1.26
SDC1-203ENST00000403076 ADCY9O60503 1353 aa22.89■■□□□ 1.26
SDC1-203ENST00000403076 TRAPPC3LQ5T215 181 aa22.89■■□□□ 1.26
SDC1-203ENST00000403076 TMEM57Q8N5G2 664 aa22.89■■□□□ 1.26
SDC1-203ENST00000403076 TFCP2L1Q9NZI6 479 aa22.89■■□□□ 1.26
SDC1-203ENST00000403076 COG6Q9Y2V7 657 aa22.89■■□□□ 1.26
SDC1-203ENST00000403076 ABCC4O15439 1325 aa22.89■■□□□ 1.25
SDC1-203ENST00000403076 NEXNQ0ZGT2 675 aa22.88■■□□□ 1.25
SDC1-203ENST00000403076 ITPRIPQ8IWB1 547 aa22.88■■□□□ 1.25
SDC1-203ENST00000403076 MAP3K15Q6ZN16 1313 aa22.88■■□□□ 1.25
SDC1-203ENST00000403076 CCT4P50991 539 aaKnown RBP22.87■■□□□ 1.25
SDC1-203ENST00000403076 ZNF827Q17R98 1081 aa22.87■■□□□ 1.25
SDC1-203ENST00000403076 AKT1S1Q96B36 256 aa22.87■■□□□ 1.25
SDC1-203ENST00000403076 CRBNQ96SW2 442 aa22.87■■□□□ 1.25
SDC1-203ENST00000403076 METTL22Q9BUU2 404 aaPredicted RBP22.87■■□□□ 1.25
SDC1-203ENST00000403076 STK32BQ9NY57 414 aa22.87■■□□□ 1.25
SDC1-203ENST00000403076 ADRA2BP18089 450 aa22.86■■□□□ 1.25
SDC1-203ENST00000403076 SSFA2P28290 1259 aa22.86■■□□□ 1.25
SDC1-203ENST00000403076 RFC4P35249 363 aa22.86■■□□□ 1.25
SDC1-203ENST00000403076 ARHGEF1Q92888 912 aaKnown RBP22.86■■□□□ 1.25
SDC1-203ENST00000403076 MYD88Q99836 296 aa22.86■■□□□ 1.25
SDC1-203ENST00000403076 SRCIN1Q9C0H9 1055 aa22.86■■□□□ 1.25
SDC1-203ENST00000403076 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.85■■□□□ 1.25
SDC1-203ENST00000403076 ERVV-1B6SEH8 477 aa22.85■■□□□ 1.25
SDC1-203ENST00000403076 ZPR1O75312 459 aa22.85■■□□□ 1.25
SDC1-203ENST00000403076 FKBP8Q14318 412 aa22.85■■□□□ 1.25
SDC1-203ENST00000403076 INTS3Q68E01 1043 aaKnown RBP22.85■■□□□ 1.25
SDC1-203ENST00000403076 AMIGO3Q86WK7 504 aa22.85■■□□□ 1.25
SDC1-203ENST00000403076 MVPQ14764 893 aaKnown RBP22.84■■□□□ 1.25
SDC1-203ENST00000403076 BEND3Q5T5X7 828 aa22.83■■□□□ 1.25
SDC1-203ENST00000403076 GIGYF2Q6Y7W6 1299 aaKnown RBP22.83■■□□□ 1.25
SDC1-203ENST00000403076 NARFQ9UHQ1 456 aa22.83■■□□□ 1.25
SDC1-203ENST00000403076 MSH5O43196 834 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 CAMTA2O94983 1202 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 SLC15A2Q16348 729 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 HLFQ16534 295 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 HSP90AB3PQ58FF7 597 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 FLAD1Q8NFF5 587 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 LINS1Q8NG48 757 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 DDX19BQ9UMR2 479 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 ZNF652Q9Y2D9 606 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 ATP5J2-PTCD1G3V325 749 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 EXOC6Q8TAG9 804 aa22.82■■□□□ 1.24
SDC1-203ENST00000403076 ANO8Q9HCE9 1232 aaPredicted RBP22.82■■□□□ 1.24
SDC1-203ENST00000403076 SRP68Q9UHB9 627 aaKnown RBP22.82■■□□□ 1.24
SDC1-203ENST00000403076 PXDNLA1KZ92 1463 aa22.81■■□□□ 1.24
SDC1-203ENST00000403076 ALDH1L1O75891 902 aa22.81■■□□□ 1.24
SDC1-203ENST00000403076 TCIRG1Q13488 830 aa22.81■■□□□ 1.24
SDC1-203ENST00000403076 USPL1Q5W0Q7 1092 aa22.81■■□□□ 1.24
SDC1-203ENST00000403076 CWF19L2Q2TBE0 894 aaKnown RBP22.8■■□□□ 1.24
SDC1-203ENST00000403076 CHMP4BQ9H444 224 aaKnown RBP22.8■■□□□ 1.24
SDC1-203ENST00000403076 UBR3Q6ZT12 1888 aa22.8■■□□□ 1.24
SDC1-203ENST00000403076 ATP10DQ9P241 1426 aa22.79■■□□□ 1.24
SDC1-203ENST00000403076 IGKV5-2P06315 115 aa22.79■■□□□ 1.24
SDC1-203ENST00000403076 ARFGEF2Q9Y6D5 1785 aa22.79■■□□□ 1.24
SDC1-203ENST00000403076 CLEC4GQ6UXB4 293 aa22.78■■□□□ 1.24
SDC1-203ENST00000403076 USP42Q9H9J4 1324 aaKnown RBP22.78■■□□□ 1.24
SDC1-203ENST00000403076 NEURL1BA8MQ27 555 aa22.77■■□□□ 1.24
SDC1-203ENST00000403076 GPTP24298 496 aa22.77■■□□□ 1.24
SDC1-203ENST00000403076 COL23A1Q86Y22 540 aaPredicted RBP22.77■■□□□ 1.24
SDC1-203ENST00000403076 C9orf78Q9NZ63 289 aaPredicted RBP22.77■■□□□ 1.24
SDC1-203ENST00000403076 NUP188Q5SRE5 1749 aa22.77■■□□□ 1.24
SDC1-203ENST00000403076 ISCA1Q9BUE6 129 aa22.76■■□□□ 1.23
SDC1-203ENST00000403076 CWC25Q9NXE8 425 aaPredicted RBP22.76■■□□□ 1.23
SDC1-203ENST00000403076 PNPLA7Q6ZV29 1317 aa22.75■■□□□ 1.23
SDC1-203ENST00000403076 ZBTB7BO15156 539 aaPredicted RBP22.75■■□□□ 1.23
SDC1-203ENST00000403076 RGL2O15211 777 aa22.75■■□□□ 1.23
SDC1-203ENST00000403076 BICDL1Q6ZP65 573 aa22.75■■□□□ 1.23
SDC1-203ENST00000403076 CCDC191Q8NCU4 936 aa22.75■■□□□ 1.23
SDC1-203ENST00000403076 BCL2L12Q9HB09 334 aa22.75■■□□□ 1.23
SDC1-203ENST00000403076 NIP7Q9Y221 180 aaKnown RBP eCLIP22.75■■□□□ 1.23
SDC1-203ENST00000403076 TRIM28Q13263 835 aaKnown RBP22.74■■□□□ 1.23
SDC1-203ENST00000403076 GCKRQ14397 625 aa22.74■■□□□ 1.23
SDC1-203ENST00000403076 ZNF34Q8IZ26 560 aa22.74■■□□□ 1.23
SDC1-203ENST00000403076 MEIS3Q99687 375 aa22.74■■□□□ 1.23
SDC1-203ENST00000403076 NUP98P52948 1817 aa22.73■■□□□ 1.23
SDC1-203ENST00000403076 GNAI3P08754 354 aa22.73■■□□□ 1.23
SDC1-203ENST00000403076 USP44Q9H0E7 712 aa22.73■■□□□ 1.23
SDC1-203ENST00000403076 NLRP10Q86W26 655 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 C4AP0C0L4 1744 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 FAM177BA6PVY3 158 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 GRM8O00222 908 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 UBTFL1P0CB47 393 aaPredicted RBP22.72■■□□□ 1.23
SDC1-203ENST00000403076 GYS1P13807 737 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 PARP10Q53GL7 1025 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 ERICH6BQ5W0A0 696 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 TBC1D9BQ66K14 1250 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 GTF3C3Q9Y5Q9 886 aa22.72■■□□□ 1.23
SDC1-203ENST00000403076 BCORQ6W2J9 1755 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms