RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 UQCRHLA0A096LP55 91 aa21.18■□□□□ 0.98
COL18A1-204ENST00000400337 UQCRHP07919 91 aa21.18■□□□□ 0.98
COL18A1-204ENST00000400337 ZSCAN30Q86W11 494 aa21.18■□□□□ 0.98
COL18A1-204ENST00000400337 TFIP11Q9UBB9 837 aaKnown RBP21.18■□□□□ 0.98
COL18A1-204ENST00000400337 MRPL50Q8N5N7 158 aaKnown RBP21.18■□□□□ 0.98
COL18A1-204ENST00000400337 SSRP1Q08945 709 aaKnown RBP21.18■□□□□ 0.98
COL18A1-204ENST00000400337 SLC39A6Q13433 755 aa21.18■□□□□ 0.98
COL18A1-204ENST00000400337 TESK2Q96S53 571 aa21.18■□□□□ 0.98
COL18A1-204ENST00000400337 SEPT11Q9NVA2 429 aaKnown RBP21.18■□□□□ 0.98
COL18A1-204ENST00000400337 EPB41L2O43491 1005 aaKnown RBP21.18■□□□□ 0.98
COL18A1-204ENST00000400337 STX6O43752 255 aa21.18■□□□□ 0.98
COL18A1-204ENST00000400337 XAGE3Q8WTP9 111 aa21.17■□□□□ 0.98
COL18A1-204ENST00000400337 TTF1Q15361 905 aaPredicted RBP21.17■□□□□ 0.98
COL18A1-204ENST00000400337 RIMS2Q9UQ26 1411 aa21.17■□□□□ 0.98
COL18A1-204ENST00000400337 NEK1Q96PY6 1258 aa21.17■□□□□ 0.98
COL18A1-204ENST00000400337 COPS6Q7L5N1 327 aa21.16■□□□□ 0.98
COL18A1-204ENST00000400337 CDC5LQ99459 802 aaKnown RBP21.16■□□□□ 0.98
COL18A1-204ENST00000400337 ITSN2Q9NZM3 1697 aa21.16■□□□□ 0.98
COL18A1-204ENST00000400337 PPFIA3O75145 1194 aa21.16■□□□□ 0.98
COL18A1-204ENST00000400337 USP16Q9Y5T5 823 aa21.16■□□□□ 0.98
COL18A1-204ENST00000400337 SFPQP23246 707 aaKnown RBP eCLIP21.16■□□□□ 0.982e-6■■■□□ 14.7
COL18A1-204ENST00000400337 DDX46Q7L014 1031 aaKnown RBP21.16■□□□□ 0.98
COL18A1-204ENST00000400337 ANKRD44Q8N8A2 993 aa21.16■□□□□ 0.98
COL18A1-204ENST00000400337 CWC15Q9P013 229 aaKnown RBP21.15■□□□□ 0.98
COL18A1-204ENST00000400337 ZNF518AQ6AHZ1 1483 aa21.15■□□□□ 0.98
COL18A1-204ENST00000400337 POLR3AO14802 1390 aaPredicted RBP21.15■□□□□ 0.98
COL18A1-204ENST00000400337 ARHGAP29Q52LW3 1261 aa21.15■□□□□ 0.98
COL18A1-204ENST00000400337 CCDC144CPQ8IYA2 1237 aa21.15■□□□□ 0.98
COL18A1-204ENST00000400337 CATIPQ7Z7H3 387 aa21.15■□□□□ 0.98
COL18A1-204ENST00000400337 PDE1AP54750 535 aa21.15■□□□□ 0.98
COL18A1-204ENST00000400337 MTHFSDQ2M296 383 aaKnown RBP21.14■□□□□ 0.98
COL18A1-204ENST00000400337 FSIP1Q8NA03 581 aa21.14■□□□□ 0.98
COL18A1-204ENST00000400337 ERLIN2O94905 339 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 RAB11FIP4Q86YS3 637 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 CCDC96Q2M329 555 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 TMEM67Q5HYA8 995 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 TNNQ9UQP3 1299 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 C6orf229H3BNL8 230 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 NLRP5P59047 1200 aa21.14■□□□□ 0.97
COL18A1-204ENST00000400337 PHAXQ9H814 394 aaKnown RBP21.14■□□□□ 0.97
COL18A1-204ENST00000400337 KIAA1328Q86T90 577 aa21.13■□□□□ 0.97
COL18A1-204ENST00000400337 ZCRB1Q8TBF4 217 aaKnown RBP21.13■□□□□ 0.97
COL18A1-204ENST00000400337 BAG4O95429 457 aaKnown RBP21.13■□□□□ 0.97
COL18A1-204ENST00000400337 HMG20BQ9P0W2 317 aa21.13■□□□□ 0.97
COL18A1-204ENST00000400337 MICU3Q86XE3 530 aa21.13■□□□□ 0.97
COL18A1-204ENST00000400337 IARSP41252 1262 aaKnown RBP21.13■□□□□ 0.97
COL18A1-204ENST00000400337 AKAP4Q5JQC9 854 aa21.13■□□□□ 0.97
COL18A1-204ENST00000400337 CCDC194A0A1B0GVG4 234 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 ERLIN1O75477 346 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 CNNM3Q8NE01 707 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 CARD14Q9BXL6 1004 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 H0YHG0 523 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 USP25Q9UHP3 1055 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 ZNF219Q9P2Y4 722 aaPredicted RBP21.12■□□□□ 0.97
COL18A1-204ENST00000400337 CTAGE5O15320 804 aa21.12■□□□□ 0.97
COL18A1-204ENST00000400337 ORC3Q9UBD5 711 aaPredicted RBP21.12■□□□□ 0.97
COL18A1-204ENST00000400337 LRRC59Q96AG4 307 aaKnown RBP21.11■□□□□ 0.97
COL18A1-204ENST00000400337 DDX19AQ9NUU7 478 aaKnown RBP21.11■□□□□ 0.97
COL18A1-204ENST00000400337 GRM8O00222 908 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 TSPYL6Q8N831 410 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 WDR7Q9Y4E6 1490 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 ATP8B2P98198 1209 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 TMX3Q96JJ7 454 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 NCOA7Q8NI08 942 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 KSR2Q6VAB6 950 aa21.11■□□□□ 0.97
COL18A1-204ENST00000400337 C16orf71Q8IYS4 520 aaPredicted RBP21.11■□□□□ 0.97
COL18A1-204ENST00000400337 SLF2Q8IX21 1173 aa21.1■□□□□ 0.97
COL18A1-204ENST00000400337 MFSD6Q6ZSS7 791 aa21.1■□□□□ 0.97
COL18A1-204ENST00000400337 CCDC66A2RUB6 948 aa21.1■□□□□ 0.97
COL18A1-204ENST00000400337 GOLGA6L10A6NI86 522 aa21.1■□□□□ 0.97
COL18A1-204ENST00000400337 ZNF397Q8NF99 534 aaPredicted RBP21.1■□□□□ 0.97
COL18A1-204ENST00000400337 ALDH1L1O75891 902 aa21.1■□□□□ 0.97
COL18A1-204ENST00000400337 MATR3P43243 847 aaKnown RBP eCLIP21.1■□□□□ 0.971e-7■■■■□ 24.2
COL18A1-204ENST00000400337 MSH6P52701 1360 aa21.1■□□□□ 0.97
COL18A1-204ENST00000400337 TCOF1Q13428 1488 aaKnown RBP21.1■□□□□ 0.97
COL18A1-204ENST00000400337 LMBR1LQ6UX01 489 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 CLIP2Q9UDT6 1046 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 NPHP3Q7Z494 1330 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 METAP2P50579 478 aaKnown RBP eCLIP21.09■□□□□ 0.973e-6■■■□□ 15.1
COL18A1-204ENST00000400337 BRF1Q92994 677 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 KRT24Q2M2I5 525 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 LEKR1Q6ZMV7 388 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 NECAB1Q8N987 351 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 PHACTR3Q96KR7 559 aa21.09■□□□□ 0.97
COL18A1-204ENST00000400337 BIN1O00499 593 aa21.08■□□□□ 0.97
COL18A1-204ENST00000400337 VAMP4O75379 141 aa21.08■□□□□ 0.97
COL18A1-204ENST00000400337 TOP1P11387 765 aaKnown RBP21.08■□□□□ 0.97
COL18A1-204ENST00000400337 RLBP1P12271 317 aa21.08■□□□□ 0.97
COL18A1-204ENST00000400337 PTPN14Q15678 1187 aa21.08■□□□□ 0.97
COL18A1-204ENST00000400337 TCEANC2Q96MN5 208 aa21.08■□□□□ 0.97
COL18A1-204ENST00000400337 TSPY2A6NKD2 308 aa21.08■□□□□ 0.96
COL18A1-204ENST00000400337 SLC4A8Q2Y0W8 1093 aa21.08■□□□□ 0.96
COL18A1-204ENST00000400337 PUS7Q96PZ0 661 aaKnown RBP21.08■□□□□ 0.96
COL18A1-204ENST00000400337 ESYT1Q9BSJ8 1104 aa21.08■□□□□ 0.96
COL18A1-204ENST00000400337 RAB34Q9BZG1 259 aa21.08■□□□□ 0.96
COL18A1-204ENST00000400337 PAF1Q8N7H5 531 aa21.08■□□□□ 0.96
COL18A1-204ENST00000400337 FLT4P35916 1363 aa21.08■□□□□ 0.96
COL18A1-204ENST00000400337 UQCRFS1P1P0C7P4 283 aa21.07■□□□□ 0.96
COL18A1-204ENST00000400337 RBM27Q9P2N5 1060 aaKnown RBP21.07■□□□□ 0.96
COL18A1-204ENST00000400337 PPP1R12BO60237 982 aaPredicted RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms