RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 NBPF7P0C2Y1 421 aaPredicted RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 ZSCAN22P10073 491 aaPredicted RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 USP25Q9UHP3 1055 aa21.94■■□□□ 1.1
USP48-204ENST00000400301 CD2BP2O95400 341 aaKnown RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 SNRPA1P09661 255 aaKnown RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 MAP3K11Q16584 847 aa21.94■■□□□ 1.1
USP48-204ENST00000400301 RBM8AQ9Y5S9 174 aaKnown RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 PNPLA6Q8IY17 1366 aa21.94■■□□□ 1.1
USP48-204ENST00000400301 PIP4K2AP48426 406 aaPredicted RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 CDK12Q9NYV4 1490 aaPredicted RBP21.94■■□□□ 1.1
USP48-204ENST00000400301 NBPF6Q5VWK0 638 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 CREBRFQ8IUR6 639 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 RASSF8Q8NHQ8 419 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 NBPF4Q96M43 638 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 RNMTO43148 476 aaKnown RBP21.93■■□□□ 1.1
USP48-204ENST00000400301 CFAP45Q9UL16 551 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 INTS4Q96HW7 963 aaKnown RBP21.93■■□□□ 1.1
USP48-204ENST00000400301 USP44Q9H0E7 712 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 TTC41PQ6P2S7 1318 aa21.93■■□□□ 1.1
USP48-204ENST00000400301 USP48Q86UV5 1035 aa21.92■■□□□ 1.1
USP48-204ENST00000400301 ZBTB3Q9H5J0 574 aa21.92■■□□□ 1.1
USP48-204ENST00000400301 TFIP11Q9UBB9 837 aaKnown RBP21.92■■□□□ 1.1
USP48-204ENST00000400301 IFIT1P09914 478 aaKnown RBP21.92■■□□□ 1.1
USP48-204ENST00000400301 AK2P54819 239 aa21.92■■□□□ 1.1
USP48-204ENST00000400301 SCAND2PQ9GZW5 306 aaPredicted RBP21.92■■□□□ 1.1
USP48-204ENST00000400301 NAT10Q9H0A0 1025 aaKnown RBP21.92■■□□□ 1.1
USP48-204ENST00000400301 ERICH2A1L162 156 aa21.92■■□□□ 1.1
USP48-204ENST00000400301 SAFBQ15424 915 aaKnown RBP eCLIP21.92■■□□□ 1.12e-6■■■■□ 20.7
USP48-204ENST00000400301 VPS37DQ86XT2 251 aa21.92■■□□□ 1.1
USP48-204ENST00000400301 CNPY2Q9Y2B0 182 aa21.92■■□□□ 1.1
USP48-204ENST00000400301 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.91■■□□□ 1.16e-9■■□□□ 13.6
USP48-204ENST00000400301 UBE2HP62256 183 aa21.91■■□□□ 1.1
USP48-204ENST00000400301 A2ML1A8K2U0 1454 aa21.9■■□□□ 1.1
USP48-204ENST00000400301 NFATC2IPQ8NCF5 419 aa21.9■■□□□ 1.1
USP48-204ENST00000400301 RRAGDQ9NQL2 400 aaPredicted RBP21.9■■□□□ 1.1
USP48-204ENST00000400301 CTNNA3Q9UI47 895 aa21.9■■□□□ 1.1
USP48-204ENST00000400301 U3KPZ7 1027 aaPredicted RBP21.9■■□□□ 1.1
USP48-204ENST00000400301 PTCH1Q13635 1447 aa21.9■■□□□ 1.1
USP48-204ENST00000400301 ALKQ9UM73 1620 aa21.9■■□□□ 1.1
USP48-204ENST00000400301 CPA1P15085 419 aa21.89■■□□□ 1.1
USP48-204ENST00000400301 USP6P35125 1406 aa21.89■■□□□ 1.1
USP48-204ENST00000400301 HOXB7P09629 217 aa21.89■■□□□ 1.1
USP48-204ENST00000400301 KIAA1210Q9ULL0 1709 aa21.89■■□□□ 1.09
USP48-204ENST00000400301 GOLIM4O00461 696 aa21.89■■□□□ 1.09
USP48-204ENST00000400301 EIF4A1P60842 406 aaKnown RBP21.88■■□□□ 1.09
USP48-204ENST00000400301 DDX46Q7L014 1031 aaKnown RBP21.88■■□□□ 1.09
USP48-204ENST00000400301 ORAI2Q96SN7 254 aa21.88■■□□□ 1.09
USP48-204ENST00000400301 HMGN5P82970 282 aaKnown RBP21.88■■□□□ 1.09
USP48-204ENST00000400301 NMIQ13287 307 aaPredicted RBP21.88■■□□□ 1.09
USP48-204ENST00000400301 KIDINS220Q9ULH0 1771 aa21.88■■□□□ 1.09
USP48-204ENST00000400301 HCLS1P14317 486 aaPredicted RBP21.88■■□□□ 1.09
USP48-204ENST00000400301 CDK11BP21127 795 aaKnown RBP21.88■■□□□ 1.09
USP48-204ENST00000400301 NRXN1Q9ULB1 1477 aa21.88■■□□□ 1.09
USP48-204ENST00000400301 DDX21Q9NR30 783 aaKnown RBP eCLIP21.87■■□□□ 1.09
USP48-204ENST00000400301 RRP12Q5JTH9 1297 aaKnown RBP21.87■■□□□ 1.09
USP48-204ENST00000400301 UQCRHLA0A096LP55 91 aa21.87■■□□□ 1.09
USP48-204ENST00000400301 UQCRHP07919 91 aa21.87■■□□□ 1.09
USP48-204ENST00000400301 CKAP2LQ8IYA6 745 aa21.87■■□□□ 1.09
USP48-204ENST00000400301 NEK1Q96PY6 1258 aa21.87■■□□□ 1.09
USP48-204ENST00000400301 IGSF1Q8N6C5 1336 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 SGSM2O43147 1006 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 KCNQ3O43525 872 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 BICC1Q9H694 974 aaKnown RBP21.86■■□□□ 1.09
USP48-204ENST00000400301 ATP2B1P20020 1258 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 CABLES1Q8TDN4 633 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 BCL11BQ9C0K0 894 aaPredicted RBP21.86■■□□□ 1.09
USP48-204ENST00000400301 GIMAP6Q6P9H5 292 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 HMG20BQ9P0W2 317 aa21.86■■□□□ 1.09
USP48-204ENST00000400301 MED14O60244 1454 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 F13A1P00488 732 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 PKP1Q13835 747 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 SSH3Q8TE77 659 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 PLEKHG1Q9ULL1 1385 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 IDH1O75874 414 aaKnown RBP21.85■■□□□ 1.09
USP48-204ENST00000400301 GUCY1B3Q02153 619 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 TPD52L1Q16890 204 aaPredicted RBP21.85■■□□□ 1.09
USP48-204ENST00000400301 IMMTQ16891 758 aaKnown RBP21.85■■□□□ 1.09
USP48-204ENST00000400301 METTL24Q5JXM2 366 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 LMBR1LQ6UX01 489 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 HOMER1Q86YM7 354 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 HOOK1Q9UJC3 728 aaKnown RBP21.85■■□□□ 1.09
USP48-204ENST00000400301 AOX1Q06278 1338 aa21.85■■□□□ 1.09
USP48-204ENST00000400301 LMBRD1Q9NUN5 540 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 CWC25Q9NXE8 425 aaPredicted RBP21.84■■□□□ 1.09
USP48-204ENST00000400301 CCT2P78371 535 aaKnown RBP21.84■■□□□ 1.09
USP48-204ENST00000400301 DNM1Q05193 864 aaKnown RBP21.84■■□□□ 1.09
USP48-204ENST00000400301 SNRKQ9NRH2 765 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 LRRC7Q96NW7 1537 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 PALD1Q9ULE6 856 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 TSPOAP1O95153 1857 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 IQSEC2Q5JU85 1478 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 MAP7D2Q96T17 732 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 TMOD3Q9NYL9 352 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 AKAP2Q9Y2D5 859 aa21.84■■□□□ 1.09
USP48-204ENST00000400301 HMGB1P09429 215 aaKnown RBP21.83■■□□□ 1.09
USP48-204ENST00000400301 STARD3NLO95772 234 aa21.83■■□□□ 1.09
USP48-204ENST00000400301 SYT1P21579 422 aa21.83■■□□□ 1.09
USP48-204ENST00000400301 SART3Q15020 963 aaKnown RBP21.83■■□□□ 1.09
USP48-204ENST00000400301 CREB3L3Q68CJ9 461 aa21.83■■□□□ 1.09
USP48-204ENST00000400301 PTPRMP28827 1452 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms