RNA–Protein interactions for RNA: ENST00000399042.4

BRCC3-206, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene BRCC3, Length 954 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-206ENST00000399042 SLC4A10Q6U841 1118 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 NBPF15Q8N660 670 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 FLAD1Q8NFF5 587 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 PHAXQ9H814 394 aaKnown RBP11.35□□□□□ -0.59
BRCC3-206ENST00000399042 CREBZFQ9NS37 354 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 TBC1D2BQ9UPU7 963 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 SIPA1L3O60292 1781 aaPredicted RBP11.35□□□□□ -0.59
BRCC3-206ENST00000399042 KDM3BQ7LBC6 1761 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 EP400Q96L91 3159 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 VIRMAQ69YN4 1812 aaKnown RBP11.35□□□□□ -0.59
BRCC3-206ENST00000399042 SBF2Q86WG5 1849 aa11.35□□□□□ -0.59
BRCC3-206ENST00000399042 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.34□□□□□ -0.59
BRCC3-206ENST00000399042 MS4A1P11836 297 aa11.34□□□□□ -0.59
BRCC3-206ENST00000399042 ANKRD13DQ6ZTN6 518 aa11.34□□□□□ -0.59
BRCC3-206ENST00000399042 DZIP3Q86Y13 1208 aaKnown RBP11.34□□□□□ -0.59
BRCC3-206ENST00000399042 API5Q9BZZ5 524 aaKnown RBP11.34□□□□□ -0.59
BRCC3-206ENST00000399042 ZBTB3Q9H5J0 574 aa11.34□□□□□ -0.59
BRCC3-206ENST00000399042 ZNF652Q9Y2D9 606 aa11.34□□□□□ -0.59
BRCC3-206ENST00000399042 SUPT16HQ9Y5B9 1047 aaKnown RBP11.34□□□□□ -0.59
BRCC3-206ENST00000399042 NPHP1O15259 732 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 NEFLP07196 543 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 SSFA2P28290 1259 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 EIF5P55010 431 aaKnown RBP11.33□□□□□ -0.6
BRCC3-206ENST00000399042 NEXNQ0ZGT2 675 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 PDIA6Q15084 440 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 SLC15A2Q16348 729 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 CHADLQ6NUI6 762 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 SMIM5Q71RC9 77 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 G2E3Q7L622 706 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 PTPRCP08575 1304 aa11.33□□□□□ -0.6
BRCC3-206ENST00000399042 COL15A1P39059 1388 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 PAPPAQ13219 1627 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 PI4KAP2A4QPH2 592 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 PLIN1O60240 522 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 ZNF827Q17R98 1081 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 KSR2Q6VAB6 950 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 TTLL7Q6ZT98 887 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 PI4KAP1Q8N8J0 262 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 ARHGEF1Q92888 912 aaKnown RBP11.32□□□□□ -0.6
BRCC3-206ENST00000399042 CLUAP1Q96AJ1 413 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 MAP3K2Q9Y2U5 619 aa11.32□□□□□ -0.6
BRCC3-206ENST00000399042 ATF7IPQ6VMQ6 1270 aa11.31□□□□□ -0.6
BRCC3-206ENST00000399042 PLBD2Q8NHP8 589 aa11.31□□□□□ -0.6
BRCC3-206ENST00000399042 F6X3S4 739 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 RRP1P56182 461 aaKnown RBP11.3□□□□□ -0.6
BRCC3-206ENST00000399042 R3HDM1Q15032 1099 aaKnown RBP11.3□□□□□ -0.6
BRCC3-206ENST00000399042 HSP90AB3PQ58FF7 597 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 USPL1Q5W0Q7 1092 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 BICDL1Q6ZP65 573 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 DZIP1LQ8IYY4 767 aaKnown RBP11.3□□□□□ -0.6
BRCC3-206ENST00000399042 DNAAF4Q8WXU2 420 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 ARHGAP45Q92619 1136 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 MYD88Q99836 296 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 ANO8Q9HCE9 1232 aaPredicted RBP11.3□□□□□ -0.6
BRCC3-206ENST00000399042 SRP68Q9UHB9 627 aaKnown RBP11.3□□□□□ -0.6
BRCC3-206ENST00000399042 NARFQ9UHQ1 456 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 UBR2Q8IWV8 1755 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 MAP3K15Q6ZN16 1313 aa11.3□□□□□ -0.6
BRCC3-206ENST00000399042 TNS1Q9HBL0 1735 aaKnown RBP11.29□□□□□ -0.6
BRCC3-206ENST00000399042 ERVV-1B6SEH8 477 aa11.29□□□□□ -0.6
BRCC3-206ENST00000399042 GTF2E1P29083 439 aaPredicted RBP11.29□□□□□ -0.6
BRCC3-206ENST00000399042 BRPF1P55201 1214 aaPredicted RBP11.29□□□□□ -0.6
BRCC3-206ENST00000399042 ITPRIPQ8IWB1 547 aa11.29□□□□□ -0.6
BRCC3-206ENST00000399042 FAM177BA6PVY3 158 aa11.28□□□□□ -0.6
BRCC3-206ENST00000399042 ATP5J2-PTCD1G3V325 749 aa11.28□□□□□ -0.6
BRCC3-206ENST00000399042 TRIM27P14373 513 aa11.28□□□□□ -0.6
BRCC3-206ENST00000399042 GPTP24298 496 aa11.28□□□□□ -0.6
BRCC3-206ENST00000399042 CCT4P50991 539 aaKnown RBP11.28□□□□□ -0.6
BRCC3-206ENST00000399042 COL23A1Q86Y22 540 aaPredicted RBP11.28□□□□□ -0.6
BRCC3-206ENST00000399042 SETDB2Q96T68 719 aa11.28□□□□□ -0.6
BRCC3-206ENST00000399042 SRCIN1Q9C0H9 1055 aa11.28□□□□□ -0.6
BRCC3-206ENST00000399042 NIP7Q9Y221 180 aaKnown RBP eCLIP11.28□□□□□ -0.6
BRCC3-206ENST00000399042 C5P01031 1676 aa11.27□□□□□ -0.6
BRCC3-206ENST00000399042 PSDA5PKW4 1024 aaPredicted RBP11.27□□□□□ -0.61
BRCC3-206ENST00000399042 SOCS7O14512 581 aa11.27□□□□□ -0.61
BRCC3-206ENST00000399042 CAMTA2O94983 1202 aa11.27□□□□□ -0.61
BRCC3-206ENST00000399042 VASPP50552 380 aaPredicted RBP11.27□□□□□ -0.61
BRCC3-206ENST00000399042 TCIRG1Q13488 830 aa11.27□□□□□ -0.61
BRCC3-206ENST00000399042 HLFQ16534 295 aa11.27□□□□□ -0.61
BRCC3-206ENST00000399042 GIGYF2Q6Y7W6 1299 aaKnown RBP11.27□□□□□ -0.61
BRCC3-206ENST00000399042 PANK1Q8TE04 598 aa11.27□□□□□ -0.61
BRCC3-206ENST00000399042 METTL22Q9BUU2 404 aaPredicted RBP11.27□□□□□ -0.61
BRCC3-206ENST00000399042 C9orf78Q9NZ63 289 aaPredicted RBP11.27□□□□□ -0.61
BRCC3-206ENST00000399042 LY75O60449 1722 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 C4BP0C0L5 1744 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 TJP1Q07157 1748 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 IRX6P78412 446 aaPredicted RBP11.26□□□□□ -0.61
BRCC3-206ENST00000399042 MSL1Q68DK7 614 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 CLEC4GQ6UXB4 293 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 LRP10Q7Z4F1 713 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 AMIGO3Q86WK7 504 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 NLGN1Q8N2Q7 840 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 CHMP4BQ9H444 224 aaKnown RBP11.26□□□□□ -0.61
BRCC3-206ENST00000399042 CWC25Q9NXE8 425 aaPredicted RBP11.26□□□□□ -0.61
BRCC3-206ENST00000399042 PNPLA7Q6ZV29 1317 aa11.26□□□□□ -0.61
BRCC3-206ENST00000399042 USP42Q9H9J4 1324 aaKnown RBP11.26□□□□□ -0.61
BRCC3-206ENST00000399042 PDE3AQ14432 1141 aa11.25□□□□□ -0.61
BRCC3-206ENST00000399042 PPP1R42Q7Z4L9 355 aa11.25□□□□□ -0.61
BRCC3-206ENST00000399042 NBPF5PQ86XG9 351 aaPredicted RBP11.25□□□□□ -0.61
BRCC3-206ENST00000399042 TMEM57Q8N5G2 664 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms