RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 FAM173BQ6P4H8 233 aa11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 ZNF771Q7L3S4 317 aaPredicted RBP11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 KHSRPQ92945 711 aaKnown RBP eCLIP11.85□□□□□ -0.519e-7■■■□□ 17.1
PTCHD4-202ENST00000398738 C16orf45Q96MC5 204 aaPredicted RBP11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 KDM4AO75164 1064 aa11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 RAPGEF3O95398 923 aa11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 LRRCC1Q9C099 1032 aa11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 QRICH2Q9H0J4 1663 aa11.85□□□□□ -0.51
PTCHD4-202ENST00000398738 GNPATO15228 680 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 FOXO3O43524 673 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 EVI5O60447 810 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 MCM2P49736 904 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 DNM1Q05193 864 aaKnown RBP11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 OXER1Q8TDS5 423 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 SPG7Q9UQ90 795 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 SMC3Q9UQE7 1217 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 ADAMTSL3P82987 1691 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 PIK3R4Q99570 1358 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 PTGS1P23219 599 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 FKBP5Q13451 457 aaPredicted RBP11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 CKAP2LQ8IYA6 745 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 ATP7AQ04656 1500 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 CCDC83Q8IWF9 413 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 COG3Q96JB2 828 aa11.84□□□□□ -0.51
PTCHD4-202ENST00000398738 TET3O43151 1660 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 NPHP1O15259 732 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 SYT1P21579 422 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 LRMPQ12912 555 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 CUL4AQ13619 759 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 FBXO31Q5XUX0 539 aaPredicted RBP11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 FAM184AQ8NB25 1140 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 COL3A1P02461 1466 aaPredicted RBP11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 LRRC7Q96NW7 1537 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 PLCG2P16885 1265 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 PTGDRQ13258 359 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 NPDC1Q9NQX5 325 aaPredicted RBP11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 RPGRIP1LQ68CZ1 1315 aa11.83□□□□□ -0.52
PTCHD4-202ENST00000398738 STX6O43752 255 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 GNAI2P04899 355 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 CWC27Q6UX04 472 aaKnown RBP11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 KCNF1Q9H3M0 494 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 CGNQ9P2M7 1197 aaKnown RBP11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 TSPYL4Q9UJ04 414 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 V9GYY5 206 aaPredicted RBP11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 FAM135BQ49AJ0 1406 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 ATP10DQ9P241 1426 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 MAP2K5Q13163 448 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 GIGYF2Q6Y7W6 1299 aaKnown RBP11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 MROH2AA6NES4 1674 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 GABBR2O75899 941 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 ZSCAN22P10073 491 aaPredicted RBP11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 LUZP1Q86V48 1076 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 NECAB1Q8N987 351 aa11.82□□□□□ -0.52
PTCHD4-202ENST00000398738 AGLP35573 1532 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 AK2P54819 239 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 PUS7Q96PZ0 661 aaKnown RBP11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 DIAPH3Q9NSV4 1193 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 NRBP1Q9UHY1 535 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 ADGRB1O14514 1584 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 CCDC186Q7Z3E2 898 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 LRRFIP2Q9Y608 721 aaKnown RBP11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 PNPLA6Q8IY17 1366 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 RIMS2Q9UQ26 1411 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 LARGE1O95461 756 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 POTEIP0CG38 1075 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 UBE2HP62256 183 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 UVSSAQ2YD98 709 aa11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 INTS4Q96HW7 963 aaKnown RBP11.81□□□□□ -0.52
PTCHD4-202ENST00000398738 KIF1BO60333 1816 aa11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 SURF6O75683 361 aaKnown RBP11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 CASTP20810 708 aaKnown RBP11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 KIAA1524Q8TCG1 905 aa11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 TCEANC2Q96MN5 208 aa11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 TFIP11Q9UBB9 837 aaKnown RBP11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 KIAA1210Q9ULL0 1709 aa11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 FBXW7Q969H0 707 aa11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 NRXN1Q9ULB1 1477 aa11.8□□□□□ -0.52
PTCHD4-202ENST00000398738 YTHDC2Q9H6S0 1430 aaKnown RBP11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 RTF1Q92541 710 aaKnown RBP11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 STK31Q9BXU1 1019 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 TRIM5Q9C035 493 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 GOLGA6L4A6NEF3 574 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 GJB2P29033 226 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 HSP90AB2PQ58FF8 381 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 TXNDC2Q86VQ3 553 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 F13A1P00488 732 aa11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 MDM2Q00987 491 aaPredicted RBP11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 UTP14CQ5TAP6 766 aaKnown RBP11.79□□□□□ -0.52
PTCHD4-202ENST00000398738 MAP3K7O43318 606 aa11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 KCNJ4P48050 445 aa11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 RUFY3Q7L099 469 aa11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 GOLGA6L6A8MZA4 724 aa11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 OS9Q13438 667 aaPredicted RBP11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 ARHGAP31Q2M1Z3 1444 aa11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 YEATS2Q9ULM3 1422 aa11.78□□□□□ -0.52
PTCHD4-202ENST00000398738 CHL1O00533 1208 aa11.77□□□□□ -0.52
PTCHD4-202ENST00000398738 CCDC192P0DO97 292 aa11.77□□□□□ -0.52
PTCHD4-202ENST00000398738 EIF4A2Q14240 407 aaKnown RBP11.77□□□□□ -0.52
PTCHD4-202ENST00000398738 SNX14Q9Y5W7 946 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms