RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 NBPF14Q5TI25 921 aa19■□□□□ 0.63
SCAF11-204ENST00000395454 NBPF10Q6P3W6 841 aaKnown RBP19■□□□□ 0.63
SCAF11-204ENST00000395454 NBPF15Q8N660 670 aa19■□□□□ 0.63
SCAF11-204ENST00000395454 DDX21Q9NR30 783 aaKnown RBP eCLIP19■□□□□ 0.63
SCAF11-204ENST00000395454 ERBB4Q15303 1308 aa19■□□□□ 0.63
SCAF11-204ENST00000395454 GNPATO15228 680 aa19■□□□□ 0.63
SCAF11-204ENST00000395454 PDIA6Q15084 440 aa19■□□□□ 0.63
SCAF11-204ENST00000395454 RREB1Q92766 1687 aa18.99■□□□□ 0.63
SCAF11-204ENST00000395454 NPM2Q86SE8 214 aaKnown RBP18.99■□□□□ 0.63
SCAF11-204ENST00000395454 PXDNLA1KZ92 1463 aa18.99■□□□□ 0.63
SCAF11-204ENST00000395454 FAM161AQ3B820 660 aa18.98■□□□□ 0.63
SCAF11-204ENST00000395454 C8orf34Q49A92 452 aa18.98■□□□□ 0.63
SCAF11-204ENST00000395454 RC3H1Q5TC82 1133 aaKnown RBP18.98■□□□□ 0.63
SCAF11-204ENST00000395454 PDZRN3Q9UPQ7 1066 aa18.98■□□□□ 0.63
SCAF11-204ENST00000395454 NUP188Q5SRE5 1749 aa18.97■□□□□ 0.63
SCAF11-204ENST00000395454 ARXQ96QS3 562 aa18.97■□□□□ 0.63
SCAF11-204ENST00000395454 PHAXQ9H814 394 aaKnown RBP18.97■□□□□ 0.63
SCAF11-204ENST00000395454 HYPKQ9NX55 129 aa18.97■□□□□ 0.63
SCAF11-204ENST00000395454 IL6STP40189 918 aaPredicted RBP18.96■□□□□ 0.63
SCAF11-204ENST00000395454 ZNF827Q17R98 1081 aa18.96■□□□□ 0.63
SCAF11-204ENST00000395454 TFCP2L1Q9NZI6 479 aa18.96■□□□□ 0.63
SCAF11-204ENST00000395454 RTCBQ9Y3I0 505 aaKnown RBP18.96■□□□□ 0.63
SCAF11-204ENST00000395454 ATP10DQ9P241 1426 aa18.96■□□□□ 0.63
SCAF11-204ENST00000395454 PHF14O94880 888 aa18.96■□□□□ 0.63
SCAF11-204ENST00000395454 RGS3P49796 1198 aa18.96■□□□□ 0.63
SCAF11-204ENST00000395454 AIMP1Q12904 312 aaKnown RBP18.96■□□□□ 0.63
SCAF11-204ENST00000395454 SMIM5Q71RC9 77 aa18.96■□□□□ 0.63
SCAF11-204ENST00000395454 G2E3Q7L622 706 aa18.95■□□□□ 0.62
SCAF11-204ENST00000395454 LRP10Q7Z4F1 713 aa18.95■□□□□ 0.62
SCAF11-204ENST00000395454 AMIGO3Q86WK7 504 aa18.95■□□□□ 0.62
SCAF11-204ENST00000395454 ANO8Q9HCE9 1232 aaPredicted RBP18.95■□□□□ 0.62
SCAF11-204ENST00000395454 RPS6KA4O75676 772 aa18.94■□□□□ 0.62
SCAF11-204ENST00000395454 EIF5P55010 431 aaKnown RBP18.94■□□□□ 0.62
SCAF11-204ENST00000395454 FLIIQ13045 1269 aa18.94■□□□□ 0.62
SCAF11-204ENST00000395454 COPS6Q7L5N1 327 aa18.94■□□□□ 0.62
SCAF11-204ENST00000395454 AKT1S1Q96B36 256 aa18.94■□□□□ 0.62
SCAF11-204ENST00000395454 XAGE3Q8WTP9 111 aa18.94■□□□□ 0.62
SCAF11-204ENST00000395454 COL15A1P39059 1388 aa18.93■□□□□ 0.62
SCAF11-204ENST00000395454 UBR3Q6ZT12 1888 aa18.93■□□□□ 0.62
SCAF11-204ENST00000395454 FKBP5Q13451 457 aaPredicted RBP18.93■□□□□ 0.62
SCAF11-204ENST00000395454 STK32BQ9NY57 414 aa18.93■□□□□ 0.62
SCAF11-204ENST00000395454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.92■□□□□ 0.62
SCAF11-204ENST00000395454 SLC15A2Q16348 729 aa18.92■□□□□ 0.62
SCAF11-204ENST00000395454 SIRT2Q8IXJ6 389 aa18.92■□□□□ 0.62
SCAF11-204ENST00000395454 CCT4P50991 539 aaKnown RBP18.92■□□□□ 0.62
SCAF11-204ENST00000395454 TRAPPC3LQ5T215 181 aa18.92■□□□□ 0.62
SCAF11-204ENST00000395454 GCC1Q96CN9 775 aa18.92■□□□□ 0.62
SCAF11-204ENST00000395454 NUCB1Q02818 461 aa18.91■□□□□ 0.62
SCAF11-204ENST00000395454 TTLL7Q6ZT98 887 aa18.91■□□□□ 0.62
SCAF11-204ENST00000395454 TBC1D2BQ9UPU7 963 aa18.91■□□□□ 0.62
SCAF11-204ENST00000395454 SSFA2P28290 1259 aa18.9■□□□□ 0.62
SCAF11-204ENST00000395454 KIF6Q6ZMV9 814 aa18.9■□□□□ 0.62
SCAF11-204ENST00000395454 DZIP3Q86Y13 1208 aaKnown RBP18.9■□□□□ 0.62
SCAF11-204ENST00000395454 TUBGCP6Q96RT7 1819 aa18.9■□□□□ 0.62
SCAF11-204ENST00000395454 DDX58O95786 925 aaKnown RBP18.9■□□□□ 0.62
SCAF11-204ENST00000395454 ANP32AP39687 249 aaKnown RBP18.9■□□□□ 0.62
SCAF11-204ENST00000395454 ARHGEF1Q92888 912 aaKnown RBP18.9■□□□□ 0.62
SCAF11-204ENST00000395454 ADRA2BP18089 450 aa18.89■□□□□ 0.61
SCAF11-204ENST00000395454 RFC4P35249 363 aa18.89■□□□□ 0.61
SCAF11-204ENST00000395454 ANKRD13DQ6ZTN6 518 aa18.89■□□□□ 0.61
SCAF11-204ENST00000395454 ZBTB3Q9H5J0 574 aa18.89■□□□□ 0.61
SCAF11-204ENST00000395454 A0A087WZG4 1122 aa18.88■□□□□ 0.61
SCAF11-204ENST00000395454 PI4KAP2A4QPH2 592 aa18.88■□□□□ 0.61
SCAF11-204ENST00000395454 MSH5O43196 834 aa18.88■□□□□ 0.61
SCAF11-204ENST00000395454 RIC3Q7Z5B4 369 aa18.88■□□□□ 0.61
SCAF11-204ENST00000395454 RPAP2Q8IXW5 612 aaPredicted RBP18.88■□□□□ 0.61
SCAF11-204ENST00000395454 PI4KAP1Q8N8J0 262 aa18.88■□□□□ 0.61
SCAF11-204ENST00000395454 C4AP0C0L4 1744 aa18.87■□□□□ 0.61
SCAF11-204ENST00000395454 ZPR1O75312 459 aa18.87■□□□□ 0.61
SCAF11-204ENST00000395454 ANKRD44Q8N8A2 993 aa18.87■□□□□ 0.61
SCAF11-204ENST00000395454 C1orf115Q9H7X2 142 aa18.87■□□□□ 0.61
SCAF11-204ENST00000395454 MAP3K15Q6ZN16 1313 aa18.87■□□□□ 0.61
SCAF11-204ENST00000395454 PNPLA7Q6ZV29 1317 aa18.87■□□□□ 0.61
SCAF11-204ENST00000395454 F6X3S4 739 aa18.86■□□□□ 0.61
SCAF11-204ENST00000395454 KSR2Q6VAB6 950 aa18.86■□□□□ 0.61
SCAF11-204ENST00000395454 COL23A1Q86Y22 540 aaPredicted RBP18.86■□□□□ 0.61
SCAF11-204ENST00000395454 FLAD1Q8NFF5 587 aa18.86■□□□□ 0.61
SCAF11-204ENST00000395454 PLBD2Q8NHP8 589 aa18.86■□□□□ 0.61
SCAF11-204ENST00000395454 SRP68Q9UHB9 627 aaKnown RBP18.86■□□□□ 0.61
SCAF11-204ENST00000395454 MAP3K2Q9Y2U5 619 aa18.86■□□□□ 0.61
SCAF11-204ENST00000395454 ADCY9O60503 1353 aa18.85■□□□□ 0.61
SCAF11-204ENST00000395454 USPL1Q5W0Q7 1092 aa18.85■□□□□ 0.61
SCAF11-204ENST00000395454 SLC4A10Q6U841 1118 aa18.85■□□□□ 0.61
SCAF11-204ENST00000395454 MEIS3Q99687 375 aa18.85■□□□□ 0.61
SCAF11-204ENST00000395454 NARFQ9UHQ1 456 aa18.85■□□□□ 0.61
SCAF11-204ENST00000395454 SRCAPQ6ZRS2 3230 aa18.85■□□□□ 0.61
SCAF11-204ENST00000395454 SOCS7O14512 581 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 CAMTA2O94983 1202 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 CEP85Q6P2H3 762 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 CHD1LQ86WJ1 897 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 IPO9Q96P70 1041 aaKnown RBP18.84■□□□□ 0.61
SCAF11-204ENST00000395454 DCTPP1Q9H773 170 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 USP42Q9H9J4 1324 aaKnown RBP18.84■□□□□ 0.61
SCAF11-204ENST00000395454 HLFQ16534 295 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 DNAAF4Q8WXU2 420 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 ARFGEF2Q9Y6D5 1785 aa18.84■□□□□ 0.61
SCAF11-204ENST00000395454 ERVV-1B6SEH8 477 aa18.83■□□□□ 0.6
SCAF11-204ENST00000395454 R3HDM1Q15032 1099 aaKnown RBP18.82■□□□□ 0.6
SCAF11-204ENST00000395454 ZNF652Q9Y2D9 606 aa18.82■□□□□ 0.6
SCAF11-204ENST00000395454 QSER1Q2KHR3 1735 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms