RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 PRDM11Q9NQV5 511 aa17.05■□□□□ 0.32
SNCA-204ENST00000394989 COL5A2P05997 1499 aaPredicted RBP17.05■□□□□ 0.32
SNCA-204ENST00000394989 BICC1Q9H694 974 aaKnown RBP17.05■□□□□ 0.32
SNCA-204ENST00000394989 SNRPA1P09661 255 aaKnown RBP17.05■□□□□ 0.32
SNCA-204ENST00000394989 HSP90AB4PQ58FF6 505 aa17.05■□□□□ 0.32
SNCA-204ENST00000394989 RIC3Q7Z5B4 369 aa17.05■□□□□ 0.32
SNCA-204ENST00000394989 PALD1Q9ULE6 856 aa17.05■□□□□ 0.32
SNCA-204ENST00000394989 USP42Q9H9J4 1324 aaKnown RBP17.05■□□□□ 0.32
SNCA-204ENST00000394989 TTC5Q8N0Z6 440 aa17.04■□□□□ 0.32
SNCA-204ENST00000394989 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.04■□□□□ 0.32
SNCA-204ENST00000394989 NEURL1BA8MQ27 555 aa17.04■□□□□ 0.32
SNCA-204ENST00000394989 CABP4P57796 275 aa17.03■□□□□ 0.32
SNCA-204ENST00000394989 LARP1Q6PKG0 1096 aaKnown RBP17.03■□□□□ 0.32
SNCA-204ENST00000394989 FMNL2Q96PY5 1086 aa17.03■□□□□ 0.32
SNCA-204ENST00000394989 LAMB4A4D0S4 1761 aa17.03■□□□□ 0.32
SNCA-204ENST00000394989 ANO2Q9NQ90 1003 aa17.03■□□□□ 0.32
SNCA-204ENST00000394989 SHANK3Q9BYB0 1731 aa17.03■□□□□ 0.32
SNCA-204ENST00000394989 OS9Q13438 667 aaPredicted RBP17.02■□□□□ 0.32
SNCA-204ENST00000394989 TOM1L2Q6ZVM7 507 aa17.02■□□□□ 0.32
SNCA-204ENST00000394989 METTL22Q9BUU2 404 aaPredicted RBP17.02■□□□□ 0.32
SNCA-204ENST00000394989 ST18O60284 1047 aa17.02■□□□□ 0.31
SNCA-204ENST00000394989 GCKRQ14397 625 aa17.02■□□□□ 0.31
SNCA-204ENST00000394989 ARFGEF2Q9Y6D5 1785 aa17.02■□□□□ 0.31
SNCA-204ENST00000394989 MYD88Q99836 296 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 ANKRD13DQ6ZTN6 518 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 UBR2Q8IWV8 1755 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 SASH1O94885 1247 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 EPHA10Q5JZY3 1008 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 ZCRB1Q8TBF4 217 aaKnown RBP17.01■□□□□ 0.31
SNCA-204ENST00000394989 HDAC5Q9UQL6 1122 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 TTC41PQ6P2S7 1318 aa17.01■□□□□ 0.31
SNCA-204ENST00000394989 PCDH11XQ9BZA7 1347 aa17■□□□□ 0.31
SNCA-204ENST00000394989 PCDH11YQ9BZA8 1340 aa17■□□□□ 0.31
SNCA-204ENST00000394989 TRAK2O60296 914 aa17■□□□□ 0.31
SNCA-204ENST00000394989 SSFA2P28290 1259 aa17■□□□□ 0.31
SNCA-204ENST00000394989 CLASRPQ8N2M8 674 aaKnown RBP17■□□□□ 0.31
SNCA-204ENST00000394989 NEXNQ0ZGT2 675 aa16.99■□□□□ 0.31
SNCA-204ENST00000394989 IL17RAQ96F46 866 aa16.99■□□□□ 0.31
SNCA-204ENST00000394989 PANK2Q9BZ23 570 aa16.99■□□□□ 0.31
SNCA-204ENST00000394989 AFDNP55196 1824 aaKnown RBP16.99■□□□□ 0.31
SNCA-204ENST00000394989 DDX11L8A8MPP1 907 aa16.99■□□□□ 0.31
SNCA-204ENST00000394989 NEK4P51957 841 aa16.99■□□□□ 0.31
SNCA-204ENST00000394989 ZGPATQ8N5A5 531 aaKnown RBP16.99■□□□□ 0.31
SNCA-204ENST00000394989 NHSL1Q5SYE7 1610 aa16.99■□□□□ 0.31
SNCA-204ENST00000394989 PAPPAQ13219 1627 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 SGSM2O43147 1006 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 ANAPC15P60006 121 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 CNTROBQ8N137 903 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 KLHDC4Q8TBB5 520 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 GLRX3O76003 335 aaKnown RBP16.98■□□□□ 0.31
SNCA-204ENST00000394989 ERC1Q8IUD2 1116 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 KCPQ6ZWJ8 1503 aa16.98■□□□□ 0.31
SNCA-204ENST00000394989 NBPF26B4DH59 902 aa16.97■□□□□ 0.31
SNCA-204ENST00000394989 PKP1Q13835 747 aa16.97■□□□□ 0.31
SNCA-204ENST00000394989 NBPF14Q5TI25 921 aa16.97■□□□□ 0.31
SNCA-204ENST00000394989 NBPF10Q6P3W6 841 aaKnown RBP16.97■□□□□ 0.31
SNCA-204ENST00000394989 NBPF15Q8N660 670 aa16.97■□□□□ 0.31
SNCA-204ENST00000394989 JARID2Q92833 1246 aaPredicted RBP16.97■□□□□ 0.31
SNCA-204ENST00000394989 CARD10Q9BWT7 1032 aa16.97■□□□□ 0.31
SNCA-204ENST00000394989 ECHDC1Q9NTX5 307 aa16.97■□□□□ 0.31
SNCA-204ENST00000394989 NKX1-1Q15270 411 aaPredicted RBP16.97■□□□□ 0.31
SNCA-204ENST00000394989 EAF2Q96CJ1 260 aaPredicted RBP16.97■□□□□ 0.31
SNCA-204ENST00000394989 CYP2E1P05181 493 aaPredicted RBP16.96■□□□□ 0.31
SNCA-204ENST00000394989 IL2RBP14784 551 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 MCCP23508 829 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 HSPA4P34932 840 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 CLEC17AQ6ZS10 378 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 AACSQ86V21 672 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 SIL1Q9H173 461 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 GBP4Q96PP9 640 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 ZMYND15Q9H091 742 aa16.96■□□□□ 0.31
SNCA-204ENST00000394989 ERVV-2B6SEH9 535 aa16.95■□□□□ 0.3
SNCA-204ENST00000394989 EPB41L2O43491 1005 aaKnown RBP16.95■□□□□ 0.3
SNCA-204ENST00000394989 STRN4Q9NRL3 753 aa16.95■□□□□ 0.3
SNCA-204ENST00000394989 TLR7Q9NYK1 1049 aaKnown RBP16.95■□□□□ 0.3
SNCA-204ENST00000394989 TOGARAM1Q9Y4F4 1720 aa16.95■□□□□ 0.3
SNCA-204ENST00000394989 ATP5J2-PTCD1G3V325 749 aa16.95■□□□□ 0.3
SNCA-204ENST00000394989 PTCD1O75127 700 aaKnown RBP16.95■□□□□ 0.3
SNCA-204ENST00000394989 IFIT2P09913 472 aaKnown RBP16.95■□□□□ 0.3
SNCA-204ENST00000394989 LSG1Q9H089 658 aaKnown RBP16.95■□□□□ 0.3
SNCA-204ENST00000394989 RAD50Q92878 1312 aa16.95■□□□□ 0.3
SNCA-204ENST00000394989 CWC27Q6UX04 472 aaKnown RBP16.95■□□□□ 0.3
SNCA-204ENST00000394989 TMX3Q96JJ7 454 aa16.95■□□□□ 0.3
SNCA-204ENST00000394989 G3BP1Q13283 466 aaKnown RBP eCLIP16.94■□□□□ 0.3
SNCA-204ENST00000394989 NUP188Q5SRE5 1749 aa16.94■□□□□ 0.3
SNCA-204ENST00000394989 PLBD2Q8NHP8 589 aa16.94■□□□□ 0.3
SNCA-204ENST00000394989 DDX54Q8TDD1 881 aaKnown RBP16.94■□□□□ 0.3
SNCA-204ENST00000394989 RFX5P48382 616 aaPredicted RBP16.93■□□□□ 0.3
SNCA-204ENST00000394989 CASP7P55210 303 aa16.93■□□□□ 0.3
SNCA-204ENST00000394989 UBE3BQ7Z3V4 1068 aa16.93■□□□□ 0.3
SNCA-204ENST00000394989 UPF3BQ9BZI7 483 aaKnown RBP16.93■□□□□ 0.3
SNCA-204ENST00000394989 CCDC8Q9H0W5 538 aaPredicted RBP16.93■□□□□ 0.3
SNCA-204ENST00000394989 GLIPR1L2Q4G1C9 344 aa16.93■□□□□ 0.3
SNCA-204ENST00000394989 CWC22Q9HCG8 908 aaKnown RBP16.93■□□□□ 0.3
SNCA-204ENST00000394989 COL15A1P39059 1388 aa16.92■□□□□ 0.3
SNCA-204ENST00000394989 TNS2Q63HR2 1409 aa16.92■□□□□ 0.3
SNCA-204ENST00000394989 HSP90AA2PQ14568 343 aaPredicted RBP16.92■□□□□ 0.3
SNCA-204ENST00000394989 RABL6Q3YEC7 729 aaPredicted RBP16.92■□□□□ 0.3
SNCA-204ENST00000394989 BAG4O95429 457 aaKnown RBP16.92■□□□□ 0.3
SNCA-204ENST00000394989 TTLL7Q6ZT98 887 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms