RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 USP16Q9Y5T5 823 aa28.32■■■□□ 2.12
TRAF4-203ENST00000394925 SLX4Q8IY92 1834 aa28.32■■■□□ 2.12
TRAF4-203ENST00000394925 TAOK3Q9H2K8 898 aa28.31■■■□□ 2.12
TRAF4-203ENST00000394925 BCORQ6W2J9 1755 aa28.3■■■□□ 2.12
TRAF4-203ENST00000394925 LTBP3Q9NS15 1303 aa28.3■■■□□ 2.12
TRAF4-203ENST00000394925 SRGNP10124 158 aa28.3■■■□□ 2.12
TRAF4-203ENST00000394925 STYK1Q6J9G0 422 aa28.3■■■□□ 2.12
TRAF4-203ENST00000394925 CFAP53Q96M91 514 aa28.3■■■□□ 2.12
TRAF4-203ENST00000394925 PRPF40BQ6NWY9 871 aaKnown RBP28.29■■■□□ 2.12
TRAF4-203ENST00000394925 PRAMEF22A3QJZ6 481 aa28.28■■■□□ 2.12
TRAF4-203ENST00000394925 MASTLQ96GX5 879 aa28.28■■■□□ 2.12
TRAF4-203ENST00000394925 DDNO94850 711 aaPredicted RBP28.26■■■□□ 2.11
TRAF4-203ENST00000394925 MCM10Q7L590 875 aa28.26■■■□□ 2.11
TRAF4-203ENST00000394925 NBPF5PQ86XG9 351 aaPredicted RBP28.26■■■□□ 2.11
TRAF4-203ENST00000394925 NUDCQ9Y266 331 aa28.26■■■□□ 2.11
TRAF4-203ENST00000394925 SOGA3Q5TF21 947 aa28.25■■■□□ 2.11
TRAF4-203ENST00000394925 RTF1Q92541 710 aaKnown RBP28.25■■■□□ 2.11
TRAF4-203ENST00000394925 SNRPA1P09661 255 aaKnown RBP28.24■■■□□ 2.11
TRAF4-203ENST00000394925 HSPA1AP0DMV8 641 aaKnown RBP28.24■■■□□ 2.11
TRAF4-203ENST00000394925 HSPA1BP0DMV9 641 aaKnown RBP28.24■■■□□ 2.11
TRAF4-203ENST00000394925 U2AF1L5P0DN76 240 aaPredicted RBP28.24■■■□□ 2.11
TRAF4-203ENST00000394925 U2AF1Q01081 240 aaKnown RBP eCLIP28.24■■■□□ 2.113e-7■■□□□ 12.8
TRAF4-203ENST00000394925 CLEC4GQ6UXB4 293 aa28.24■■■□□ 2.11
TRAF4-203ENST00000394925 TNS4Q8IZW8 715 aa28.24■■■□□ 2.11
TRAF4-203ENST00000394925 ARFGEF2Q9Y6D5 1785 aa28.24■■■□□ 2.11
TRAF4-203ENST00000394925 CAPN15O75808 1086 aa28.23■■■□□ 2.11
TRAF4-203ENST00000394925 ZNF652Q9Y2D9 606 aa28.23■■■□□ 2.11
TRAF4-203ENST00000394925 POTEIP0CG38 1075 aa28.22■■■□□ 2.11
TRAF4-203ENST00000394925 POTEJP0CG39 1038 aa28.22■■■□□ 2.11
TRAF4-203ENST00000394925 CHADLQ6NUI6 762 aa28.22■■■□□ 2.11
TRAF4-203ENST00000394925 DCTN1Q14203 1278 aa28.21■■■□□ 2.11
TRAF4-203ENST00000394925 C7orf43Q8WVR3 580 aa28.2■■■□□ 2.1
TRAF4-203ENST00000394925 NPR1P16066 1061 aa28.19■■■□□ 2.1
TRAF4-203ENST00000394925 CCDC93Q567U6 631 aa28.19■■■□□ 2.1
TRAF4-203ENST00000394925 NIP7Q9Y221 180 aaKnown RBP eCLIP28.19■■■□□ 2.1
TRAF4-203ENST00000394925 FAM177BA6PVY3 158 aa28.18■■■□□ 2.1
TRAF4-203ENST00000394925 NBPF26B4DH59 902 aa28.18■■■□□ 2.1
TRAF4-203ENST00000394925 NBPF10Q6P3W6 841 aaKnown RBP28.18■■■□□ 2.1
TRAF4-203ENST00000394925 TPTE2Q6XPS3 522 aa28.18■■■□□ 2.1
TRAF4-203ENST00000394925 NBPF15Q8N660 670 aa28.18■■■□□ 2.1
TRAF4-203ENST00000394925 PPP2R1AP30153 589 aa28.17■■■□□ 2.1
TRAF4-203ENST00000394925 CREBZFQ9NS37 354 aa28.17■■■□□ 2.1
TRAF4-203ENST00000394925 MKRN1Q9UHC7 482 aaKnown RBP28.16■■■□□ 2.1
TRAF4-203ENST00000394925 KLRG2A4D1S0 409 aaPredicted RBP28.14■■■□□ 2.1
TRAF4-203ENST00000394925 IQCA1LA6NCM1 817 aa28.14■■■□□ 2.1
TRAF4-203ENST00000394925 FKBP4Q02790 459 aaKnown RBP eCLIP28.14■■■□□ 2.1
TRAF4-203ENST00000394925 OLFM4Q6UX06 510 aa28.14■■■□□ 2.1
TRAF4-203ENST00000394925 ZNF277Q9NRM2 450 aaPredicted RBP28.14■■■□□ 2.1
TRAF4-203ENST00000394925 HTATSF1O43719 755 aaKnown RBP28.13■■■□□ 2.09
TRAF4-203ENST00000394925 TAF7Q15545 349 aaPredicted RBP28.13■■■□□ 2.09
TRAF4-203ENST00000394925 MIS18AQ9NYP9 233 aa28.13■■■□□ 2.09
TRAF4-203ENST00000394925 HLFQ16534 295 aa28.12■■■□□ 2.09
TRAF4-203ENST00000394925 L3MBTL3Q96JM7 780 aaPredicted RBP28.12■■■□□ 2.09
TRAF4-203ENST00000394925 TAF1DQ9H5J8 278 aaPredicted RBP28.12■■■□□ 2.09
TRAF4-203ENST00000394925 SCN4AP35499 1836 aa28.12■■■□□ 2.09
TRAF4-203ENST00000394925 RGL2O15211 777 aa28.11■■■□□ 2.09
TRAF4-203ENST00000394925 GTF2E1P29083 439 aaPredicted RBP28.11■■■□□ 2.09
TRAF4-203ENST00000394925 LDHDQ86WU2 507 aa28.11■■■□□ 2.09
TRAF4-203ENST00000394925 ZNF541Q9H0D2 1346 aa28.1■■■□□ 2.09
TRAF4-203ENST00000394925 RTKN2Q8IZC4 609 aa28.09■■■□□ 2.09
TRAF4-203ENST00000394925 NGEFQ8N5V2 710 aa28.09■■■□□ 2.09
TRAF4-203ENST00000394925 EAPPQ56P03 285 aaPredicted RBP28.08■■■□□ 2.09
TRAF4-203ENST00000394925 PASKQ96RG2 1323 aa28.08■■■□□ 2.09
TRAF4-203ENST00000394925 ALDH1B1P30837 517 aa28.07■■■□□ 2.08
TRAF4-203ENST00000394925 SYNE4Q8N205 404 aa28.06■■■□□ 2.08
TRAF4-203ENST00000394925 HACL1Q9UJ83 578 aa28.06■■■□□ 2.08
TRAF4-203ENST00000394925 CLEC11AQ9Y240 323 aa28.06■■■□□ 2.08
TRAF4-203ENST00000394925 LAMB4A4D0S4 1761 aa28.06■■■□□ 2.08
TRAF4-203ENST00000394925 IARSP41252 1262 aaKnown RBP28.05■■■□□ 2.08
TRAF4-203ENST00000394925 CNTNAP1P78357 1384 aa28.05■■■□□ 2.08
TRAF4-203ENST00000394925 NUTM1Q86Y26 1132 aa28.04■■■□□ 2.08
TRAF4-203ENST00000394925 ITGBL1O95965 494 aaPredicted RBP28.03■■■□□ 2.08
TRAF4-203ENST00000394925 EPHX2P34913 555 aa28.03■■■□□ 2.08
TRAF4-203ENST00000394925 NYXQ9GZU5 481 aa28.03■■■□□ 2.08
TRAF4-203ENST00000394925 DLG5Q8TDM6 1919 aa28.02■■■□□ 2.08
TRAF4-203ENST00000394925 ABCC12Q96J65 1359 aa28.02■■■□□ 2.08
TRAF4-203ENST00000394925 NUP98P52948 1817 aa28.02■■■□□ 2.08
TRAF4-203ENST00000394925 NEFMP07197 916 aa28.02■■■□□ 2.08
TRAF4-203ENST00000394925 RRP7AQ9Y3A4 280 aaKnown RBP28.02■■■□□ 2.08
TRAF4-203ENST00000394925 RNF123Q5XPI4 1314 aa28.01■■■□□ 2.07
TRAF4-203ENST00000394925 TMEM88BA6NKF7 163 aa28.01■■■□□ 2.07
TRAF4-203ENST00000394925 FZD9O00144 591 aa28.01■■■□□ 2.07
TRAF4-203ENST00000394925 PNISRQ8TF01 805 aaKnown RBP28.01■■■□□ 2.07
TRAF4-203ENST00000394925 MAP3K15Q6ZN16 1313 aa28■■■□□ 2.07
TRAF4-203ENST00000394925 ERVV-1B6SEH8 477 aa28■■■□□ 2.07
TRAF4-203ENST00000394925 CRY2Q49AN0 593 aa28■■■□□ 2.07
TRAF4-203ENST00000394925 TTLL7Q6ZT98 887 aa28■■■□□ 2.07
TRAF4-203ENST00000394925 KDM3BQ7LBC6 1761 aa27.99■■■□□ 2.07
TRAF4-203ENST00000394925 FOXN1O15353 648 aa27.99■■■□□ 2.07
TRAF4-203ENST00000394925 MYL6BP14649 208 aa27.99■■■□□ 2.07
TRAF4-203ENST00000394925 KIF6Q6ZMV9 814 aa27.99■■■□□ 2.07
TRAF4-203ENST00000394925 GPTP24298 496 aa27.98■■■□□ 2.07
TRAF4-203ENST00000394925 VEGFBP49765 207 aa27.98■■■□□ 2.07
TRAF4-203ENST00000394925 EIF4A1P60842 406 aaKnown RBP27.98■■■□□ 2.07
TRAF4-203ENST00000394925 PNMA8AQ86V59 439 aaPredicted RBP27.98■■■□□ 2.07
TRAF4-203ENST00000394925 JDP2Q8WYK2 163 aa27.98■■■□□ 2.07
TRAF4-203ENST00000394925 PSMD1Q99460 953 aa27.98■■■□□ 2.07
TRAF4-203ENST00000394925 ADAMTSL1Q8N6G6 1762 aa27.97■■■□□ 2.07
TRAF4-203ENST00000394925 GPC2Q8N158 579 aa27.97■■■□□ 2.07
TRAF4-203ENST00000394925 RPGRQ92834 1020 aaKnown RBP27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms