RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 BRCA1P38398 1863 aaKnown RBP11.7□□□□□ -0.54
ATG4A-205ENST00000394892 NFKBIEO00221 500 aa11.69□□□□□ -0.54
ATG4A-205ENST00000394892 CLEC4GQ6UXB4 293 aa11.69□□□□□ -0.54
ATG4A-205ENST00000394892 TTLL6Q8N841 843 aa11.69□□□□□ -0.54
ATG4A-205ENST00000394892 SETDB2Q96T68 719 aa11.69□□□□□ -0.54
ATG4A-205ENST00000394892 AFDNP55196 1824 aaKnown RBP11.69□□□□□ -0.54
ATG4A-205ENST00000394892 KLRG2A4D1S0 409 aaPredicted RBP11.68□□□□□ -0.54
ATG4A-205ENST00000394892 CHL1O00533 1208 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 ANXA1P04083 346 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 NEUROD2Q15784 382 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 NGEFQ8N5V2 710 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 SMC1BQ8NDV3 1235 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 RUNDC1Q96C34 613 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 KLRG1Q96E93 195 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 PNNQ9H307 717 aaKnown RBP11.68□□□□□ -0.54
ATG4A-205ENST00000394892 RRAGCQ9HB90 399 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 TSPYL4Q9UJ04 414 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 KDM3BQ7LBC6 1761 aa11.68□□□□□ -0.54
ATG4A-205ENST00000394892 H0YIN7 160 aa11.67□□□□□ -0.54
ATG4A-205ENST00000394892 NEFMP07197 916 aa11.67□□□□□ -0.54
ATG4A-205ENST00000394892 SRGNP10124 158 aa11.67□□□□□ -0.54
ATG4A-205ENST00000394892 SLC51AQ86UW1 340 aa11.67□□□□□ -0.54
ATG4A-205ENST00000394892 CNBD1Q8NA66 436 aa11.67□□□□□ -0.54
ATG4A-205ENST00000394892 DLG5Q8TDM6 1919 aa11.66□□□□□ -0.54
ATG4A-205ENST00000394892 UBN2Q6ZU65 1347 aa11.66□□□□□ -0.54
ATG4A-205ENST00000394892 RGL2O15211 777 aa11.66□□□□□ -0.54
ATG4A-205ENST00000394892 MYL6BP14649 208 aa11.66□□□□□ -0.54
ATG4A-205ENST00000394892 C7orf43Q8WVR3 580 aa11.66□□□□□ -0.54
ATG4A-205ENST00000394892 ZNF622Q969S3 477 aaKnown RBP eCLIP11.66□□□□□ -0.54
ATG4A-205ENST00000394892 NIP7Q9Y221 180 aaKnown RBP eCLIP11.66□□□□□ -0.54
ATG4A-205ENST00000394892 ANKRD31Q8N7Z5 1873 aa11.66□□□□□ -0.54
ATG4A-205ENST00000394892 MAP3K15Q6ZN16 1313 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 ZC3H4Q9UPT8 1303 aaKnown RBP11.65□□□□□ -0.54
ATG4A-205ENST00000394892 BCORQ6W2J9 1755 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 FAM177BA6PVY3 158 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 ERVV-1B6SEH8 477 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 C21orf2O43822 256 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 PDE6BP35913 854 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 OLFM4Q6UX06 510 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 NBPF5PQ86XG9 351 aaPredicted RBP11.65□□□□□ -0.54
ATG4A-205ENST00000394892 JMYQ8N9B5 988 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 ZBTB3Q9H5J0 574 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 BABAM1Q9NWV8 329 aa11.65□□□□□ -0.54
ATG4A-205ENST00000394892 ZNF219Q9P2Y4 722 aaPredicted RBP11.65□□□□□ -0.54
ATG4A-205ENST00000394892 ABCC12Q96J65 1359 aa11.65□□□□□ -0.55
ATG4A-205ENST00000394892 COL11A2P13942 1736 aaPredicted RBP11.64□□□□□ -0.55
ATG4A-205ENST00000394892 APAF1O14727 1248 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 ZNF853P0CG23 659 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 EIF2S2P20042 333 aaKnown RBP11.64□□□□□ -0.55
ATG4A-205ENST00000394892 LMNB1P20700 586 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 WDR43Q15061 677 aaKnown RBP eCLIP11.64□□□□□ -0.55
ATG4A-205ENST00000394892 SUSD4Q5VX71 490 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 STYK1Q6J9G0 422 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 C3orf67Q6ZVT6 689 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 NUTM1Q86Y26 1132 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 ZNF34Q8IZ26 560 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 NECTIN2Q92692 538 aa11.64□□□□□ -0.55
ATG4A-205ENST00000394892 VEGFAP15692 232 aaPredicted RBP11.63□□□□□ -0.55
ATG4A-205ENST00000394892 GPTP24298 496 aa11.63□□□□□ -0.55
ATG4A-205ENST00000394892 HTRA3P83110 453 aa11.63□□□□□ -0.55
ATG4A-205ENST00000394892 ERFEQ4G0M1 354 aa11.63□□□□□ -0.55
ATG4A-205ENST00000394892 PRPF40BQ6NWY9 871 aaKnown RBP11.63□□□□□ -0.55
ATG4A-205ENST00000394892 NPM2Q86SE8 214 aaKnown RBP11.63□□□□□ -0.55
ATG4A-205ENST00000394892 ZNF652Q9Y2D9 606 aa11.63□□□□□ -0.55
ATG4A-205ENST00000394892 ARFGEF1Q9Y6D6 1849 aa11.63□□□□□ -0.55
ATG4A-205ENST00000394892 ERBB4Q15303 1308 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 NTSR2O95665 410 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 ST5P78524 1137 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 LMOD3Q0VAK6 560 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 DPY19L2Q6NUT2 758 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 TPTE2Q6XPS3 522 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 TNS4Q8IZW8 715 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 MASTLQ96GX5 879 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 PDZRN3Q9UPQ7 1066 aa11.62□□□□□ -0.55
ATG4A-205ENST00000394892 GLTPD2A6NH11 291 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 POTECB2RU33 542 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 CRY2Q49AN0 593 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 COL13A1Q5TAT6 717 aaPredicted RBP11.61□□□□□ -0.55
ATG4A-205ENST00000394892 GIGYF2Q6Y7W6 1299 aaKnown RBP11.61□□□□□ -0.55
ATG4A-205ENST00000394892 COPS6Q7L5N1 327 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 SYNE4Q8N205 404 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 XAGE3Q8WTP9 111 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 MBIPQ9NS73 344 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 LAS1LQ9Y4W2 734 aaKnown RBP11.61□□□□□ -0.55
ATG4A-205ENST00000394892 LAMB4A4D0S4 1761 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 DLEC1Q9Y238 1755 aa11.61□□□□□ -0.55
ATG4A-205ENST00000394892 SNED1Q8TER0 1413 aa11.6□□□□□ -0.55
ATG4A-205ENST00000394892 WDR90Q96KV7 1748 aa11.6□□□□□ -0.55
ATG4A-205ENST00000394892 NPR1P16066 1061 aa11.6□□□□□ -0.55
ATG4A-205ENST00000394892 CNKSR1Q969H4 720 aa11.6□□□□□ -0.55
ATG4A-205ENST00000394892 CFAP44Q96MT7 982 aa11.6□□□□□ -0.55
ATG4A-205ENST00000394892 ZNF316A6NFI3 1004 aaPredicted RBP11.59□□□□□ -0.55
ATG4A-205ENST00000394892 CAPN15O75808 1086 aa11.59□□□□□ -0.55
ATG4A-205ENST00000394892 KIF6Q6ZMV9 814 aa11.59□□□□□ -0.55
ATG4A-205ENST00000394892 DDX21Q9NR30 783 aaKnown RBP eCLIP11.59□□□□□ -0.55
ATG4A-205ENST00000394892 CHPF2Q9P2E5 772 aa11.59□□□□□ -0.55
ATG4A-205ENST00000394892 LTBP3Q9NS15 1303 aa11.59□□□□□ -0.55
ATG4A-205ENST00000394892 TNRC6CQ9HCJ0 1690 aaKnown RBP11.59□□□□□ -0.55
ATG4A-205ENST00000394892 SLX4Q8IY92 1834 aa11.58□□□□□ -0.56
ATG4A-205ENST00000394892 NPHP1O15259 732 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms