RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FEZ1Q99689 392 aa16.71■□□□□ 0.27
RTF1-201ENST00000389629 ANO10Q9NW15 660 aa16.71■□□□□ 0.27
RTF1-201ENST00000389629 PATL2C9JE40 543 aaKnown RBP16.71■□□□□ 0.27
RTF1-201ENST00000389629 ANXA1P04083 346 aa16.71■□□□□ 0.27
RTF1-201ENST00000389629 ECHDC1Q9NTX5 307 aa16.71■□□□□ 0.27
RTF1-201ENST00000389629 BTBD11A6QL63 1104 aa16.71■□□□□ 0.27
RTF1-201ENST00000389629 TYRO3Q06418 890 aa16.71■□□□□ 0.27
RTF1-201ENST00000389629 PDIA4P13667 645 aaKnown RBP16.71■□□□□ 0.26
RTF1-201ENST00000389629 PLEKHO1Q53GL0 409 aaPredicted RBP16.71■□□□□ 0.26
RTF1-201ENST00000389629 TMC6Q7Z403 805 aa16.71■□□□□ 0.26
RTF1-201ENST00000389629 NCKAP5LQ9HCH0 1330 aa16.71■□□□□ 0.26
RTF1-201ENST00000389629 SBNO2Q9Y2G9 1366 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 IL13P35225 146 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 RUFY1Q96T51 708 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 MYL6BP14649 208 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 ZFYVE9O95405 1425 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 BRD1O95696 1058 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 SIRT2Q8IXJ6 389 aa16.7■□□□□ 0.26
RTF1-201ENST00000389629 AKAP17AQ02040 695 aaKnown RBP16.69■□□□□ 0.26
RTF1-201ENST00000389629 KRT32Q14532 448 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 ANKRD20A12PQ8NF67 263 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 CAGE1Q8TC20 777 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 PI4KAP2A4QPH2 592 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 PI4KAP1Q8N8J0 262 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 SMTNL1A8MU46 457 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 ZSWIM4Q9H7M6 989 aa16.69■□□□□ 0.26
RTF1-201ENST00000389629 TTC37Q6PGP7 1564 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 NEMFO60524 1076 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 LMAN1P49257 510 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 RIMS2Q9UQ26 1411 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 ABCA8O94911 1581 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 ISM2Q6H9L7 571 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 ERCC4Q92889 916 aaPredicted RBP16.68■□□□□ 0.26
RTF1-201ENST00000389629 UGGT1Q9NYU2 1555 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 FAM193AP78312 1265 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 GTF3C6Q969F1 213 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 PALD1Q9ULE6 856 aa16.68■□□□□ 0.26
RTF1-201ENST00000389629 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.68■□□□□ 0.26
RTF1-201ENST00000389629 CFAP65Q6ZU64 1925 aaKnown RBP16.67■□□□□ 0.26
RTF1-201ENST00000389629 TSPYL1Q9H0U9 437 aa16.67■□□□□ 0.26
RTF1-201ENST00000389629 EIF3JO75822 258 aaKnown RBP16.67■□□□□ 0.26
RTF1-201ENST00000389629 ERLIN1O75477 346 aa16.67■□□□□ 0.26
RTF1-201ENST00000389629 MTHFSDQ2M296 383 aaKnown RBP16.67■□□□□ 0.26
RTF1-201ENST00000389629 EVI5LQ96CN4 794 aa16.67■□□□□ 0.26
RTF1-201ENST00000389629 CDC42BPAQ5VT25 1732 aa16.67■□□□□ 0.26
RTF1-201ENST00000389629 FSIP1Q8NA03 581 aa16.67■□□□□ 0.26
RTF1-201ENST00000389629 ZNF397Q8NF99 534 aaPredicted RBP16.67■□□□□ 0.26
RTF1-201ENST00000389629 RAPGEF4Q8WZA2 1011 aa16.67■□□□□ 0.26
RTF1-201ENST00000389629 PHF23Q9BUL5 403 aaPredicted RBP16.67■□□□□ 0.26
RTF1-201ENST00000389629 ACEP12821 1306 aa16.66■□□□□ 0.26
RTF1-201ENST00000389629 DMTNQ08495 405 aa16.66■□□□□ 0.26
RTF1-201ENST00000389629 SAFBQ15424 915 aaKnown RBP eCLIP16.66■□□□□ 0.26
RTF1-201ENST00000389629 FAM173BQ6P4H8 233 aa16.66■□□□□ 0.26
RTF1-201ENST00000389629 ABCC1P33527 1531 aa16.66■□□□□ 0.26
RTF1-201ENST00000389629 CCDC171Q6TFL3 1326 aa16.66■□□□□ 0.26
RTF1-201ENST00000389629 SLU7O95391 586 aaKnown RBP16.66■□□□□ 0.26
RTF1-201ENST00000389629 DEF6Q9H4E7 631 aa16.66■□□□□ 0.26
RTF1-201ENST00000389629 RBM8AQ9Y5S9 174 aaKnown RBP16.66■□□□□ 0.26
RTF1-201ENST00000389629 JARID2Q92833 1246 aaPredicted RBP16.65■□□□□ 0.26
RTF1-201ENST00000389629 NLRP2Q9NX02 1062 aa16.65■□□□□ 0.26
RTF1-201ENST00000389629 DNAI1Q9UI46 699 aa16.65■□□□□ 0.26
RTF1-201ENST00000389629 TTC21BQ7Z4L5 1316 aa16.65■□□□□ 0.26
RTF1-201ENST00000389629 PNMA6EA0A0J9YXQ4 647 aa16.65■□□□□ 0.26
RTF1-201ENST00000389629 STX1AQ16623 288 aa16.65■□□□□ 0.26
RTF1-201ENST00000389629 NSFL1CQ9UNZ2 370 aaKnown RBP16.65■□□□□ 0.26
RTF1-201ENST00000389629 CBFA2T2O43439 604 aa16.64■□□□□ 0.26
RTF1-201ENST00000389629 CCAR1Q8IX12 1150 aaKnown RBP16.64■□□□□ 0.26
RTF1-201ENST00000389629 PIK3R4Q99570 1358 aa16.64■□□□□ 0.25
RTF1-201ENST00000389629 PPFIBP1Q86W92 1011 aa16.64■□□□□ 0.25
RTF1-201ENST00000389629 CCT2P78371 535 aaKnown RBP16.64■□□□□ 0.25
RTF1-201ENST00000389629 CHL1O00533 1208 aa16.64■□□□□ 0.25
RTF1-201ENST00000389629 DHX16O60231 1041 aaKnown RBP16.64■□□□□ 0.25
RTF1-201ENST00000389629 GSDMDP57764 484 aa16.64■□□□□ 0.25
RTF1-201ENST00000389629 DHX8Q14562 1220 aaKnown RBP16.63■□□□□ 0.25
RTF1-201ENST00000389629 TRIM34Q9BYJ4 488 aa16.63■□□□□ 0.25
RTF1-201ENST00000389629 IBTKQ9P2D0 1353 aaPredicted RBP16.63■□□□□ 0.25
RTF1-201ENST00000389629 TRPM2O94759 1503 aa16.63■□□□□ 0.25
RTF1-201ENST00000389629 ATP7AQ04656 1500 aa16.63■□□□□ 0.25
RTF1-201ENST00000389629 CCDC69A6NI79 296 aa16.63■□□□□ 0.25
RTF1-201ENST00000389629 NAP1L1P55209 391 aaKnown RBP16.63■□□□□ 0.25
RTF1-201ENST00000389629 CLASP1Q7Z460 1538 aa16.63■□□□□ 0.25
RTF1-201ENST00000389629 TOP1P11387 765 aaKnown RBP16.62■□□□□ 0.25
RTF1-201ENST00000389629 CASQ1P31415 396 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 SNX14Q9Y5W7 946 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 YTHDC2Q9H6S0 1430 aaKnown RBP16.62■□□□□ 0.25
RTF1-201ENST00000389629 SOS1Q07889 1333 aaPredicted RBP16.62■□□□□ 0.25
RTF1-201ENST00000389629 ARHGAP29Q52LW3 1261 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 MPRIPQ6WCQ1 1025 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 NPATQ14207 1427 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 RTL1A6NKG5 1358 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 CROCC2H7BZ55 1655 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 ZSCAN12O43309 604 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 KIF2CQ99661 725 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 LRRC2Q9BYS8 371 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 MAP3K2Q9Y2U5 619 aa16.62■□□□□ 0.25
RTF1-201ENST00000389629 CTAGE5O15320 804 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 PA2G4Q9UQ80 394 aaKnown RBP16.61■□□□□ 0.25
RTF1-201ENST00000389629 FILIP1LQ4L180 1135 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 JMYQ8N9B5 988 aa16.61■□□□□ 0.25
RTF1-201ENST00000389629 CHPF2Q9P2E5 772 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms