RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 MIPOL1Q8TD10 442 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 TESK2Q96S53 571 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 RAPGEF6Q8TEU7 1601 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 NUP160Q12769 1436 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 ATP8B1O43520 1251 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 ERCC6LQ2NKX8 1250 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 SMARCE1Q969G3 411 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 SPATA31E1Q6ZUB1 1445 aa13.65□□□□□ -0.22
NPHP4-202ENST00000378161 ITSN2Q9NZM3 1697 aa13.65□□□□□ -0.23
NPHP4-202ENST00000378161 IRF6O14896 467 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 TUBB4AP04350 444 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 ELF1P32519 619 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 TMPOP42166 694 aaKnown RBP13.64□□□□□ -0.23
NPHP4-202ENST00000378161 ITFG2Q969R8 447 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 WDR62O43379 1518 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 NAA30Q147X3 362 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-202ENST00000378161 MAP3K11Q16584 847 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 TWISTNBQ3B726 338 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-202ENST00000378161 NEK4P51957 841 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 RNF168Q8IYW5 571 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-202ENST00000378161 FAM177A1Q8N128 213 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-202ENST00000378161 BICD2Q8TD16 824 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 MRFAP1Q9Y605 127 aa13.64□□□□□ -0.23
NPHP4-202ENST00000378161 POTEB2H3BUK9 544 aa13.63□□□□□ -0.23
NPHP4-202ENST00000378161 TNMDQ9H2S6 317 aa13.63□□□□□ -0.23
NPHP4-202ENST00000378161 SUGP1Q8IWZ8 645 aaKnown RBP13.63□□□□□ -0.23
NPHP4-202ENST00000378161 CABS1Q96KC9 395 aa13.63□□□□□ -0.23
NPHP4-202ENST00000378161 MX1P20591 662 aa13.63□□□□□ -0.23
NPHP4-202ENST00000378161 NUP62CLQ9H1M0 184 aa13.63□□□□□ -0.23
NPHP4-202ENST00000378161 INCENPQ9NQS7 918 aa13.63□□□□□ -0.23
NPHP4-202ENST00000378161 FRMD3A2A2Y4 597 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 TMEM57Q8N5G2 664 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 TBC1D22AQ8WUA7 517 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 RUFY2Q8WXA3 655 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 DNMT1P26358 1616 aaKnown RBP13.62□□□□□ -0.23
NPHP4-202ENST00000378161 SAAL1Q96ER3 474 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 SCLT1Q96NL6 688 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 GDPD2Q9HCC8 539 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 CCDC181Q5TID7 509 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 NFXL1Q6ZNB6 911 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 C1orf115Q9H7X2 142 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 ETAA1Q9NY74 926 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 ABCC11Q96J66 1382 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 SSH1Q8WYL5 1049 aa13.62□□□□□ -0.23
NPHP4-202ENST00000378161 CHCHD3Q9NX63 227 aaKnown RBP13.62□□□□□ -0.23
NPHP4-202ENST00000378161 SRGAP3O43295 1099 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 FCHSD2O94868 740 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 KIF4AO95239 1232 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 SCP2P22307 547 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 FAM200AQ8TCP9 573 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 PHACTR2O75167 634 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 CEP85LQ5SZL2 805 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 INSRP06213 1382 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 GOLGA6L9A6NEM1 432 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 SWT1Q5T5J6 900 aaKnown RBP13.61□□□□□ -0.23
NPHP4-202ENST00000378161 CAPN7Q9Y6W3 813 aa13.61□□□□□ -0.23
NPHP4-202ENST00000378161 ANKRD65E5RJM6 399 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 SFPQP23246 707 aaKnown RBP eCLIP13.6□□□□□ -0.23
NPHP4-202ENST00000378161 CLCN6P51797 869 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 CCDC50Q8IVM0 306 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 SMC3Q9UQE7 1217 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 ATAD2Q6PL18 1390 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 RAPGEF3O95398 923 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 GSDMDP57764 484 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 CCDC27Q2M243 656 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 GIMAP6Q6P9H5 292 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 FAM114A1Q8IWE2 563 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 SWAP70Q9UH65 585 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 ELP1O95163 1332 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 ACRBPQ8NEB7 543 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 MICAL1Q8TDZ2 1067 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 PUS7Q96PZ0 661 aaKnown RBP13.6□□□□□ -0.23
NPHP4-202ENST00000378161 PRAM1Q96QH2 718 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 ASXL1Q8IXJ9 1541 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 CHUKO15111 745 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 MFSD4BQ5TF39 518 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 DNAI1Q9UI46 699 aa13.6□□□□□ -0.23
NPHP4-202ENST00000378161 SAMD9Q5K651 1589 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 ZKSCAN1P17029 563 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-202ENST00000378161 EVCP57679 992 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 HDXQ7Z353 690 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 PACS2Q86VP3 889 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 ADAM21Q9UKJ8 722 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 ALDH1L2Q3SY69 923 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 GPT2Q8TD30 523 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 TSPYL4Q9UJ04 414 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 LRRC23Q53EV4 343 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-202ENST00000378161 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.59□□□□□ -0.236e-7■■■■■ 109
NPHP4-202ENST00000378161 GCC2Q8IWJ2 1684 aa13.59□□□□□ -0.23
NPHP4-202ENST00000378161 VPS37CA5D8V6 355 aaPredicted RBP13.58□□□□□ -0.23
NPHP4-202ENST00000378161 EID1Q9Y6B2 187 aa13.58□□□□□ -0.23
NPHP4-202ENST00000378161 SHANK2Q9UPX8 1470 aa13.58□□□□□ -0.24
NPHP4-202ENST00000378161 GCFC2P16383 781 aaKnown RBP13.58□□□□□ -0.24
NPHP4-202ENST00000378161 RANBP1P43487 201 aa13.58□□□□□ -0.24
NPHP4-202ENST00000378161 TMEM132AQ24JP5 1023 aa13.58□□□□□ -0.24
NPHP4-202ENST00000378161 FAM135AQ9P2D6 1515 aa13.58□□□□□ -0.24
NPHP4-202ENST00000378161 ADGRF5Q8IZF2 1346 aa13.58□□□□□ -0.24
NPHP4-202ENST00000378161 PIK3C2GO75747 1445 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 GNAI3P08754 354 aa13.57□□□□□ -0.24
NPHP4-202ENST00000378161 HSPA4P34932 840 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms