RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 L1TD1Q5T7N2 865 aaKnown RBP11.76□□□□□ -0.53
TRIM39-202ENST00000376659 ANXA1P04083 346 aa11.76□□□□□ -0.53
TRIM39-202ENST00000376659 VSIG10Q8N0Z9 540 aa11.76□□□□□ -0.53
TRIM39-202ENST00000376659 GPT2Q8TD30 523 aa11.76□□□□□ -0.53
TRIM39-202ENST00000376659 ZMYND15Q9H091 742 aa11.76□□□□□ -0.53
TRIM39-202ENST00000376659 PHKG2P15735 406 aa11.76□□□□□ -0.53
TRIM39-202ENST00000376659 XPCQ01831 940 aaPredicted RBP11.76□□□□□ -0.53
TRIM39-202ENST00000376659 KRT28Q7Z3Y7 464 aa11.76□□□□□ -0.53
TRIM39-202ENST00000376659 CWC22Q9HCG8 908 aaKnown RBP11.76□□□□□ -0.53
TRIM39-202ENST00000376659 DBF4Q9UBU7 674 aaPredicted RBP11.76□□□□□ -0.53
TRIM39-202ENST00000376659 TTC41PQ6P2S7 1318 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 MED23Q9ULK4 1368 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 BRD1O95696 1058 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 TMX3Q96JJ7 454 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.75□□□□□ -0.53
TRIM39-202ENST00000376659 DOCK2Q92608 1830 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 ZNF445P59923 1031 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 KSR2Q6VAB6 950 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 FOXD4L1Q9NU39 408 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 ERBB4Q15303 1308 aa11.75□□□□□ -0.53
TRIM39-202ENST00000376659 CASP7P55210 303 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 ST3GAL1Q11201 340 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 C19orf44Q9H6X5 657 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 SLC52A2Q9HAB3 445 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 INTS4Q96HW7 963 aaKnown RBP11.74□□□□□ -0.53
TRIM39-202ENST00000376659 GRPEL1Q9HAV7 217 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 AKAP11Q9UKA4 1901 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 GOLGA6L3A6NEY3 463 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 SASH1O94885 1247 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 RFX5P48382 616 aaPredicted RBP11.74□□□□□ -0.53
TRIM39-202ENST00000376659 NUTM1Q86Y26 1132 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 SUCLG2Q96I99 432 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 MAP3K2Q9Y2U5 619 aa11.74□□□□□ -0.53
TRIM39-202ENST00000376659 ROBO1Q9Y6N7 1651 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 C4AP0C0L4 1744 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 C4BP0C0L5 1744 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 KIF1BPQ96EK5 621 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 GBP4Q96PP9 640 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 IL1RAPL2Q9NP60 686 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 PTMSP20962 102 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 MRE11P49959 708 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 DDX21Q9NR30 783 aaKnown RBP eCLIP11.73□□□□□ -0.53
TRIM39-202ENST00000376659 COL9A3Q14050 684 aaPredicted RBP11.73□□□□□ -0.53
TRIM39-202ENST00000376659 SKOR2Q2VWA4 1001 aaPredicted RBP11.73□□□□□ -0.53
TRIM39-202ENST00000376659 CHAMP1Q96JM3 812 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 SNX14Q9Y5W7 946 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 SPATA31A3Q5VYP0 1347 aa11.73□□□□□ -0.53
TRIM39-202ENST00000376659 SLIT2O94813 1529 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 CYP27B1O15528 508 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 SRGAP3O43295 1099 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 NSFL1CQ9UNZ2 370 aaKnown RBP11.72□□□□□ -0.53
TRIM39-202ENST00000376659 MYO5AQ9Y4I1 1855 aaKnown RBP11.72□□□□□ -0.53
TRIM39-202ENST00000376659 CWF19L2Q2TBE0 894 aaKnown RBP11.72□□□□□ -0.53
TRIM39-202ENST00000376659 ZNF790Q6PG37 636 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 CASC1Q6TDU7 716 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 RASEFQ8IZ41 740 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 HYPKQ9NX55 129 aa11.72□□□□□ -0.53
TRIM39-202ENST00000376659 NUP98P52948 1817 aa11.71□□□□□ -0.53
TRIM39-202ENST00000376659 NUCB2P80303 420 aa11.71□□□□□ -0.53
TRIM39-202ENST00000376659 RABL6Q3YEC7 729 aaPredicted RBP11.71□□□□□ -0.53
TRIM39-202ENST00000376659 PPP1R9BQ96SB3 815 aa11.71□□□□□ -0.53
TRIM39-202ENST00000376659 COL14A1Q05707 1796 aaKnown RBP11.71□□□□□ -0.53
TRIM39-202ENST00000376659 BCORQ6W2J9 1755 aa11.71□□□□□ -0.53
TRIM39-202ENST00000376659 DOT1LQ8TEK3 1739 aa11.71□□□□□ -0.53
TRIM39-202ENST00000376659 ST18O60284 1047 aa11.71□□□□□ -0.54
TRIM39-202ENST00000376659 EPHA10Q5JZY3 1008 aa11.71□□□□□ -0.54
TRIM39-202ENST00000376659 LINS1Q8NG48 757 aa11.71□□□□□ -0.54
TRIM39-202ENST00000376659 DDX17Q92841 729 aaKnown RBP11.71□□□□□ -0.54
TRIM39-202ENST00000376659 GZF1Q9H116 711 aaPredicted RBP11.71□□□□□ -0.54
TRIM39-202ENST00000376659 COL5A3P25940 1745 aaPredicted RBP11.7□□□□□ -0.54
TRIM39-202ENST00000376659 NEURL1BA8MQ27 555 aa11.7□□□□□ -0.54
TRIM39-202ENST00000376659 EIF2S2P20042 333 aaKnown RBP11.7□□□□□ -0.54
TRIM39-202ENST00000376659 TMEM87AQ8NBN3 555 aa11.7□□□□□ -0.54
TRIM39-202ENST00000376659 BICC1Q9H694 974 aaKnown RBP11.7□□□□□ -0.54
TRIM39-202ENST00000376659 RFX7Q2KHR2 1363 aa11.7□□□□□ -0.54
TRIM39-202ENST00000376659 ZNF831Q5JPB2 1677 aa11.7□□□□□ -0.54
TRIM39-202ENST00000376659 TLR7Q9NYK1 1049 aaKnown RBP11.7□□□□□ -0.54
TRIM39-202ENST00000376659 MCM2P49736 904 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 RUFY3Q7L099 469 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 DISP2A7MBM2 1401 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 GRM8O00222 908 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 SURF6O75683 361 aaKnown RBP11.69□□□□□ -0.54
TRIM39-202ENST00000376659 TEFQ10587 303 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 PA2G4Q9UQ80 394 aaKnown RBP11.69□□□□□ -0.54
TRIM39-202ENST00000376659 PTH1RQ03431 593 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 PDE4CQ08493 712 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 NECTIN1Q15223 517 aa11.69□□□□□ -0.54
TRIM39-202ENST00000376659 ZSCAN23Q3MJ62 389 aa11.68□□□□□ -0.54
TRIM39-202ENST00000376659 LARGE1O95461 756 aa11.68□□□□□ -0.54
TRIM39-202ENST00000376659 C14orf37Q86TY3 774 aa11.68□□□□□ -0.54
TRIM39-202ENST00000376659 PDLIM2Q96JY6 352 aa11.68□□□□□ -0.54
TRIM39-202ENST00000376659 MAP4K4O95819 1239 aaPredicted RBP11.68□□□□□ -0.54
TRIM39-202ENST00000376659 TRHP20396 242 aaPredicted RBP11.68□□□□□ -0.54
TRIM39-202ENST00000376659 NEK4P51957 841 aa11.68□□□□□ -0.54
TRIM39-202ENST00000376659 C1orf141Q5JVX7 400 aa11.68□□□□□ -0.54
TRIM39-202ENST00000376659 EAF2Q96CJ1 260 aaPredicted RBP11.68□□□□□ -0.54
TRIM39-202ENST00000376659 TMEM63CQ9P1W3 806 aa11.67□□□□□ -0.54
TRIM39-202ENST00000376659 GCKRQ14397 625 aa11.67□□□□□ -0.54
TRIM39-202ENST00000376659 ZNF496Q96IT1 587 aaPredicted RBP11.67□□□□□ -0.54
TRIM39-202ENST00000376659 METTL22Q9BUU2 404 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms