RNA–Protein interactions for RNA: ENST00000373474.8

LMX1B-202, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-202ENST00000373474 HMG20BQ9P0W2 317 aa16.46■□□□□ 0.23
LMX1B-202ENST00000373474 KIF5CO60282 957 aa16.45■□□□□ 0.22
LMX1B-202ENST00000373474 DYNC1I1O14576 645 aa16.45■□□□□ 0.22
LMX1B-202ENST00000373474 SSRP1Q08945 709 aaKnown RBP16.45■□□□□ 0.22
LMX1B-202ENST00000373474 SMC1AQ14683 1233 aaKnown RBP16.45■□□□□ 0.22
LMX1B-202ENST00000373474 NAPBQ9H115 298 aa16.45■□□□□ 0.22
LMX1B-202ENST00000373474 POLR3GO15318 223 aaPredicted RBP16.44■□□□□ 0.22
LMX1B-202ENST00000373474 NF2P35240 595 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 PPP1R42Q7Z4L9 355 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 SLC12A7Q9Y666 1083 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 PIK3C2GO75747 1445 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 ZSCAN22P10073 491 aaPredicted RBP16.44■□□□□ 0.22
LMX1B-202ENST00000373474 DHX37Q8IY37 1157 aaKnown RBP16.44■□□□□ 0.22
LMX1B-202ENST00000373474 GOLGA8BA8MQT2 603 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 PIBF1Q8WXW3 757 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 ARHGEF12Q9NZN5 1544 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 STAMBPO95630 424 aa16.44■□□□□ 0.22
LMX1B-202ENST00000373474 SSBP05455 408 aaKnown RBP eCLIP16.43■□□□□ 0.22
LMX1B-202ENST00000373474 TMEM132AQ24JP5 1023 aa16.43■□□□□ 0.22
LMX1B-202ENST00000373474 TSHZ3Q63HK5 1081 aa16.43■□□□□ 0.22
LMX1B-202ENST00000373474 SYCP2Q9BX26 1530 aa16.43■□□□□ 0.22
LMX1B-202ENST00000373474 URI1O94763 535 aaPredicted RBP16.43■□□□□ 0.22
LMX1B-202ENST00000373474 CCT2P78371 535 aaKnown RBP16.43■□□□□ 0.22
LMX1B-202ENST00000373474 IFIT5Q13325 482 aaKnown RBP16.43■□□□□ 0.22
LMX1B-202ENST00000373474 GIGYF2Q6Y7W6 1299 aaKnown RBP16.43■□□□□ 0.22
LMX1B-202ENST00000373474 FBXO31Q5XUX0 539 aaPredicted RBP16.43■□□□□ 0.22
LMX1B-202ENST00000373474 LUZP1Q86V48 1076 aa16.43■□□□□ 0.22
LMX1B-202ENST00000373474 CNNM3Q8NE01 707 aa16.43■□□□□ 0.22
LMX1B-202ENST00000373474 TMOD3Q9NYL9 352 aa16.43■□□□□ 0.22
LMX1B-202ENST00000373474 GCOM1H8Y6P7 765 aaPredicted RBP16.42■□□□□ 0.22
LMX1B-202ENST00000373474 MYZAPP0CAP1 466 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 MAP3K12Q12852 859 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 SPA17Q15506 151 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 RNF187Q5TA31 235 aaPredicted RBP16.42■□□□□ 0.22
LMX1B-202ENST00000373474 DENND4BO75064 1496 aaPredicted RBP16.42■□□□□ 0.22
LMX1B-202ENST00000373474 GOLGA8AA7E2F4 631 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 NEK1Q96PY6 1258 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 CAVIN2O95810 425 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 GTF2A1P52655 376 aaPredicted RBP16.42■□□□□ 0.22
LMX1B-202ENST00000373474 ANAPC15P60006 121 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 ANKRD44Q8N8A2 993 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 C16orf45Q96MC5 204 aaPredicted RBP16.42■□□□□ 0.22
LMX1B-202ENST00000373474 PHF8Q9UPP1 1060 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 NUP153P49790 1475 aaKnown RBP16.42■□□□□ 0.22
LMX1B-202ENST00000373474 WWC2Q6AWC2 1192 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 ZMYND15Q9H091 742 aa16.42■□□□□ 0.22
LMX1B-202ENST00000373474 IPO4Q8TEX9 1081 aaKnown RBP16.41■□□□□ 0.22
LMX1B-202ENST00000373474 TFIP11Q9UBB9 837 aaKnown RBP16.41■□□□□ 0.22
LMX1B-202ENST00000373474 ABCF2Q9UG63 623 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 AMOTL2Q9Y2J4 779 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 ZNF608Q9ULD9 1512 aaPredicted RBP16.41■□□□□ 0.22
LMX1B-202ENST00000373474 GTF2F1P35269 517 aaKnown RBP eCLIP16.41■□□□□ 0.22
LMX1B-202ENST00000373474 BMS1Q14692 1282 aaKnown RBP16.41■□□□□ 0.22
LMX1B-202ENST00000373474 PRIMPOLQ96LW4 560 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 SLC5A1P13866 664 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 FKBP15Q5T1M5 1219 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 PPM1EQ8WY54 764 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 CEP63Q96MT8 703 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 ESYT1Q9BSJ8 1104 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 ZSCAN16Q9H4T2 348 aaPredicted RBP16.41■□□□□ 0.22
LMX1B-202ENST00000373474 ZNF287Q9HBT7 754 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 MINDY4BA8MYZ0 360 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 CAVIN4Q5BKX8 364 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 KLHL10Q6JEL2 608 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 TMC6Q7Z403 805 aa16.41■□□□□ 0.22
LMX1B-202ENST00000373474 RHPN1Q8TCX5 695 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 SMARCC1Q92922 1105 aaPredicted RBP16.4■□□□□ 0.22
LMX1B-202ENST00000373474 SEPT11Q9NVA2 429 aaKnown RBP16.4■□□□□ 0.22
LMX1B-202ENST00000373474 TRMT1Q9NXH9 659 aaKnown RBP16.4■□□□□ 0.22
LMX1B-202ENST00000373474 A0A087WZG4 1122 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 XRCC6P12956 609 aaKnown RBP eCLIP16.4■□□□□ 0.22
LMX1B-202ENST00000373474 PDE1AP54750 535 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 RNF41Q9H4P4 317 aaPredicted RBP16.4■□□□□ 0.22
LMX1B-202ENST00000373474 SEC63Q9UGP8 760 aaKnown RBP16.4■□□□□ 0.22
LMX1B-202ENST00000373474 CCDC175P0C221 793 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 PPP4R3BQ5MIZ7 849 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 CLCN1P35523 988 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 MEIS3Q99687 375 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 TSG101Q99816 390 aa16.4■□□□□ 0.22
LMX1B-202ENST00000373474 KIF4BQ2VIQ3 1234 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 PLCH2O75038 1416 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 ANKRD18BA2A2Z9 1011 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 PTCD1O75127 700 aaKnown RBP16.39■□□□□ 0.21
LMX1B-202ENST00000373474 DESP17661 470 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 CETN2P41208 172 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 TTF1Q15361 905 aaPredicted RBP16.39■□□□□ 0.21
LMX1B-202ENST00000373474 CCDC150Q8NCX0 1101 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 ZNF652Q9Y2D9 606 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 ATP10BO94823 1461 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 GOLIM4O00461 696 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 ZNF165P49910 485 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 PAXBP1Q9Y5B6 917 aa16.39■□□□□ 0.21
LMX1B-202ENST00000373474 IFIT3O14879 490 aaKnown RBP16.38■□□□□ 0.21
LMX1B-202ENST00000373474 SPECC1LQ69YQ0 1117 aa16.38■□□□□ 0.21
LMX1B-202ENST00000373474 CTCFLQ8NI51 663 aaPredicted RBP16.38■□□□□ 0.21
LMX1B-202ENST00000373474 ACEP12821 1306 aa16.38■□□□□ 0.21
LMX1B-202ENST00000373474 PI4KAP2A4QPH2 592 aa16.38■□□□□ 0.21
LMX1B-202ENST00000373474 PI4KAP1Q8N8J0 262 aa16.38■□□□□ 0.21
LMX1B-202ENST00000373474 WDR62O43379 1518 aa16.38■□□□□ 0.21
LMX1B-202ENST00000373474 IVLP07476 585 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms