RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 PARP3Q9Y6F1 533 aa19.12■□□□□ 0.65
COL9A1-204ENST00000370496 AFDNP55196 1824 aaKnown RBP19.12■□□□□ 0.65
COL9A1-204ENST00000370496 STK31Q9BXU1 1019 aa19.11■□□□□ 0.65
COL9A1-204ENST00000370496 MAP3K15Q6ZN16 1313 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 ARFGEF2Q9Y6D5 1785 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 BICDL1Q6ZP65 573 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 TTLL7Q6ZT98 887 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 ZBTB3Q9H5J0 574 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 NRXN2Q9P2S2 1712 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 CARMIL3Q8ND23 1372 aa19.1■□□□□ 0.65
COL9A1-204ENST00000370496 DDR1Q08345 913 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 SLFN5Q08AF3 891 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 AIMP1Q12904 312 aaKnown RBP19.09■□□□□ 0.65
COL9A1-204ENST00000370496 NFIXQ14938 502 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 LRP10Q7Z4F1 713 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 XAGE3Q8WTP9 111 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 FHDC1Q9C0D6 1143 aaPredicted RBP19.09■□□□□ 0.65
COL9A1-204ENST00000370496 HYPKQ9NX55 129 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 KIF13BQ9NQT8 1826 aa19.09■□□□□ 0.65
COL9A1-204ENST00000370496 TBC1D9BQ66K14 1250 aa19.08■□□□□ 0.65
COL9A1-204ENST00000370496 CDCA7LQ96GN5 454 aa19.08■□□□□ 0.65
COL9A1-204ENST00000370496 C10orf71Q711Q0 1435 aa19.08■□□□□ 0.65
COL9A1-204ENST00000370496 CACNA1FO60840 1977 aa19.08■□□□□ 0.64
COL9A1-204ENST00000370496 POLRMTO00411 1230 aaKnown RBP19.07■□□□□ 0.64
COL9A1-204ENST00000370496 RGL2O15211 777 aa19.07■□□□□ 0.64
COL9A1-204ENST00000370496 CLEC4GQ6UXB4 293 aa19.07■□□□□ 0.64
COL9A1-204ENST00000370496 COPS6Q7L5N1 327 aa19.07■□□□□ 0.64
COL9A1-204ENST00000370496 ATP10DQ9P241 1426 aa19.07■□□□□ 0.64
COL9A1-204ENST00000370496 ZBED9Q6R2W3 1325 aa19.07■□□□□ 0.64
COL9A1-204ENST00000370496 ERVV-1B6SEH8 477 aa19.06■□□□□ 0.64
COL9A1-204ENST00000370496 TCERG1O14776 1098 aaKnown RBP19.06■□□□□ 0.64
COL9A1-204ENST00000370496 SETDB2Q96T68 719 aa19.06■□□□□ 0.64
COL9A1-204ENST00000370496 NPHP1O15259 732 aa19.06■□□□□ 0.64
COL9A1-204ENST00000370496 TM4SF1P30408 202 aa19.06■□□□□ 0.64
COL9A1-204ENST00000370496 HLFQ16534 295 aa19.06■□□□□ 0.64
COL9A1-204ENST00000370496 NIP7Q9Y221 180 aaKnown RBP eCLIP19.05■□□□□ 0.64
COL9A1-204ENST00000370496 VAMP4O75379 141 aa19.04■□□□□ 0.64
COL9A1-204ENST00000370496 CD2APQ9Y5K6 639 aa19.04■□□□□ 0.64
COL9A1-204ENST00000370496 KIAA1551Q9HCM1 1747 aa19.03■□□□□ 0.64
COL9A1-204ENST00000370496 N4BP2Q86UW6 1770 aaPredicted RBP19.03■□□□□ 0.64
COL9A1-204ENST00000370496 SERPINB2P05120 415 aa19.03■□□□□ 0.64
COL9A1-204ENST00000370496 GIGYF2Q6Y7W6 1299 aaKnown RBP19.03■□□□□ 0.64
COL9A1-204ENST00000370496 SYT17Q9BSW7 474 aa19.03■□□□□ 0.64
COL9A1-204ENST00000370496 PHAXQ9H814 394 aaKnown RBP19.03■□□□□ 0.64
COL9A1-204ENST00000370496 DDX58O95786 925 aaKnown RBP19.02■□□□□ 0.64
COL9A1-204ENST00000370496 HSP90AB3PQ58FF7 597 aa19.02■□□□□ 0.64
COL9A1-204ENST00000370496 NBPF5PQ86XG9 351 aaPredicted RBP19.02■□□□□ 0.64
COL9A1-204ENST00000370496 CNBD1Q8NA66 436 aa19.02■□□□□ 0.64
COL9A1-204ENST00000370496 PLBD2Q8NHP8 589 aa19.02■□□□□ 0.64
COL9A1-204ENST00000370496 ANKRD31Q8N7Z5 1873 aa19.01■□□□□ 0.63
COL9A1-204ENST00000370496 SLC4A2P04920 1241 aa19.01■□□□□ 0.63
COL9A1-204ENST00000370496 GPTP24298 496 aa19.01■□□□□ 0.63
COL9A1-204ENST00000370496 ANKRD13DQ6ZTN6 518 aa19.01■□□□□ 0.63
COL9A1-204ENST00000370496 NLGN2Q8NFZ4 835 aa19.01■□□□□ 0.63
COL9A1-204ENST00000370496 FAM177BA6PVY3 158 aa19■□□□□ 0.63
COL9A1-204ENST00000370496 ST5P78524 1137 aa19■□□□□ 0.63
COL9A1-204ENST00000370496 RIC3Q7Z5B4 369 aa19■□□□□ 0.63
COL9A1-204ENST00000370496 TRMT2AQ8IZ69 625 aaKnown RBP19■□□□□ 0.63
COL9A1-204ENST00000370496 PXDNLA1KZ92 1463 aa19■□□□□ 0.63
COL9A1-204ENST00000370496 DLEC1Q9Y238 1755 aa19■□□□□ 0.63
COL9A1-204ENST00000370496 IBTKQ9P2D0 1353 aaPredicted RBP18.99■□□□□ 0.63
COL9A1-204ENST00000370496 COL11A2P13942 1736 aaPredicted RBP18.99■□□□□ 0.63
COL9A1-204ENST00000370496 PRR5LQ6MZQ0 368 aa18.99■□□□□ 0.63
COL9A1-204ENST00000370496 UBN2Q6ZU65 1347 aa18.99■□□□□ 0.63
COL9A1-204ENST00000370496 FLIIQ13045 1269 aa18.98■□□□□ 0.63
COL9A1-204ENST00000370496 TNRC6CQ9HCJ0 1690 aaKnown RBP18.97■□□□□ 0.63
COL9A1-204ENST00000370496 FKBP5Q13451 457 aaPredicted RBP18.97■□□□□ 0.63
COL9A1-204ENST00000370496 PARP10Q53GL7 1025 aa18.97■□□□□ 0.63
COL9A1-204ENST00000370496 G2E3Q7L622 706 aa18.97■□□□□ 0.63
COL9A1-204ENST00000370496 ZNF34Q8IZ26 560 aa18.97■□□□□ 0.63
COL9A1-204ENST00000370496 ZNF428Q96B54 188 aa18.97■□□□□ 0.63
COL9A1-204ENST00000370496 NYXQ9GZU5 481 aa18.97■□□□□ 0.63
COL9A1-204ENST00000370496 BRCA1P38398 1863 aaKnown RBP18.97■□□□□ 0.63
COL9A1-204ENST00000370496 CT47B1P0C2W7 299 aaPredicted RBP18.96■□□□□ 0.63
COL9A1-204ENST00000370496 GTF2E1P29083 439 aaPredicted RBP18.96■□□□□ 0.63
COL9A1-204ENST00000370496 TCIRG1Q13488 830 aa18.95■□□□□ 0.62
COL9A1-204ENST00000370496 TPTE2Q6XPS3 522 aa18.95■□□□□ 0.62
COL9A1-204ENST00000370496 PPP1R42Q7Z4L9 355 aa18.95■□□□□ 0.62
COL9A1-204ENST00000370496 CCDC24Q8N4L8 307 aa18.95■□□□□ 0.62
COL9A1-204ENST00000370496 MAP3K2Q9Y2U5 619 aa18.95■□□□□ 0.62
COL9A1-204ENST00000370496 ADCY9O60503 1353 aa18.95■□□□□ 0.62
COL9A1-204ENST00000370496 TGFB2P61812 414 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 KSR2Q6VAB6 950 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 PELP1Q8IZL8 1130 aaKnown RBP18.94■□□□□ 0.62
COL9A1-204ENST00000370496 MYD88Q99836 296 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 BCL2L13Q9BXK5 485 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 SMC4Q9NTJ3 1288 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 LAMB2P55268 1798 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 ABCC12Q96J65 1359 aa18.94■□□□□ 0.62
COL9A1-204ENST00000370496 PI4KAP2A4QPH2 592 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 DCAF8L1A6NGE4 600 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 ATP5J2-PTCD1G3V325 749 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 SUSD4Q5VX71 490 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 NLRP10Q86W26 655 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 NUTM1Q86Y26 1132 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 PI4KAP1Q8N8J0 262 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 CACNA1SQ13698 1873 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 NTSR2O95665 410 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 PDE6BP35913 854 aa18.93■□□□□ 0.62
COL9A1-204ENST00000370496 NEXNQ0ZGT2 675 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms