RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 ALS2CR12Q96Q35 445 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 PNMA2Q9UL42 364 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 ALDH3A1P30838 453 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 NUCKS1Q9H1E3 243 aaKnown RBP4.34□□□□□ -1.71
SYNE1-207ENST00000367255 SMIM24O75264 130 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 CRACR2AQ9BSW2 395 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC155Q8N6L0 562 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 FLOT1O75955 427 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 USP37Q86T82 979 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 ABCF3Q9NUQ8 709 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 PPP1R12BO60237 982 aaPredicted RBP4.34□□□□□ -1.72
SYNE1-207ENST00000367255 MAP7Q14244 749 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 SAFBQ15424 915 aaKnown RBP eCLIP4.34□□□□□ -1.72
SYNE1-207ENST00000367255 MAP3K21Q5TCX8 1036 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 CTNNA3Q9UI47 895 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 HSP90AB2PQ58FF8 381 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 TMCO3Q6UWJ1 677 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 MAGEF1Q9HAY2 307 aa4.34□□□□□ -1.72
SYNE1-207ENST00000367255 IRX4P78413 519 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 RANBP1P43487 201 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 CEBPZQ03701 1054 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC144CPQ8IYA2 1237 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC51Q96ER9 411 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 PRR23CQ6ZRP0 262 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 PIP4K2CQ8TBX8 421 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 KIAA1524Q8TCG1 905 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 ARFGAP3Q9NP61 516 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 ZSCAN16Q9H4T2 348 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 DIABLOQ9NR28 239 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 YY1P25490 414 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 AMOTQ4VCS5 1084 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 SDCCAG8Q86SQ7 713 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 TUBA8Q9NY65 449 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 LCA5Q86VQ0 697 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 EIF3CLB5ME19 914 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 CEP131Q9UPN4 1083 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 ABCD1P33897 745 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 TMCO5AQ8N6Q1 288 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 RRP36Q96EU6 259 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 DDX41Q9UJV9 622 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 TUBB6Q9BUF5 446 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 STAG3Q9UJ98 1225 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 USP47Q96K76 1375 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 KINO60870 393 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 ZKSCAN8Q15776 578 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 SREK1Q8WXA9 508 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 ABLIM1O14639 778 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 STAMBPO95630 424 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 PLCB4Q15147 1175 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 GLT8D2Q9H1C3 349 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 GIGYF1O75420 1035 aaPredicted RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 MPHOSPH8Q99549 860 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 POGKQ9P215 609 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 RPGRQ92834 1020 aaKnown RBP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 SMC5Q8IY18 1101 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 GNAI1P63096 354 aa4.33□□□□□ -1.72
SYNE1-207ENST00000367255 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.33□□□□□ -1.72
SYNE1-207ENST00000367255 FAM170AA1A519 330 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 GCOM1H8Y6P7 765 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 MYZAPP0CAP1 466 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 CETN2P41208 172 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 BIRC2Q13490 618 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 SNRNP27Q8WVK2 155 aaKnown RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 KDM5DQ9BY66 1539 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 BRD3Q15059 726 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 SLC4A10Q6U841 1118 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 NSRP1Q9H0G5 558 aaKnown RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 STIM2Q9P246 746 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 TRIM21P19474 475 aaKnown RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 C22orf23Q9BZE7 217 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 PPIP5K1Q6PFW1 1433 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 POTEB3A0JP26 581 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 KCNQ3O43525 872 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 CEP104O60308 925 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 POTEBQ6S5H4 581 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 CEP85LQ5SZL2 805 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 DCAF11Q8TEB1 546 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 MYL1P05976 194 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 SYTL4Q96C24 671 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 MIS18AQ9NYP9 233 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 KRT18P05783 430 aaKnown RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 SMC3Q9UQE7 1217 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 NPHP3Q7Z494 1330 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 AREL1O15033 823 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 KCNJ4P48050 445 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 SLC52A1Q9NWF4 448 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 REREQ9P2R6 1566 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 HSPA8P11142 646 aaKnown RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 SF3A1Q15459 793 aaKnown RBP4.32□□□□□ -1.72
SYNE1-207ENST00000367255 ZNF287Q9HBT7 754 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 FAM184BQ9ULE4 1060 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 PTPRCP08575 1304 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 FGD6Q6ZV73 1430 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 OPA1O60313 960 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 FBLN1P23142 703 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 C20orf194Q5TEA3 1177 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 BATF3Q9NR55 127 aa4.32□□□□□ -1.72
SYNE1-207ENST00000367255 RPL26L1Q9UNX3 145 aaKnown RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms