RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
COL6A1-201ENST00000361866 CCDC94Q9BW85 323 aaPredicted RBP16.3■□□□□ 0.2
COL6A1-201ENST00000361866 BRD1O95696 1058 aa16.29■□□□□ 0.2
COL6A1-201ENST00000361866 SKILP12757 684 aa16.29■□□□□ 0.2
COL6A1-201ENST00000361866 DDX46Q7L014 1031 aaKnown RBP16.29■□□□□ 0.2
COL6A1-201ENST00000361866 CCAR1Q8IX12 1150 aaKnown RBP16.29■□□□□ 0.2
COL6A1-201ENST00000361866 DBF4Q9UBU7 674 aaPredicted RBP16.29■□□□□ 0.2
COL6A1-201ENST00000361866 ERICH2A1L162 156 aa16.29■□□□□ 0.2
COL6A1-201ENST00000361866 HAND2P61296 217 aa16.29■□□□□ 0.2
COL6A1-201ENST00000361866 TMC6Q7Z403 805 aa16.29■□□□□ 0.2
COL6A1-201ENST00000361866 PUS7Q96PZ0 661 aaKnown RBP16.29■□□□□ 0.2
COL6A1-201ENST00000361866 ATP5J2-PTCD1G3V325 749 aa16.28■□□□□ 0.2
COL6A1-201ENST00000361866 PTCD1O75127 700 aaKnown RBP16.28■□□□□ 0.2
COL6A1-201ENST00000361866 ANKRD20A12PQ8NF67 263 aa16.28■□□□□ 0.2
COL6A1-201ENST00000361866 ABCC2Q92887 1545 aa16.28■□□□□ 0.2
COL6A1-201ENST00000361866 CWF19L2Q2TBE0 894 aaKnown RBP16.28■□□□□ 0.2
COL6A1-201ENST00000361866 TTC39AQ5SRH9 613 aa16.28■□□□□ 0.2
COL6A1-201ENST00000361866 NEK1Q96PY6 1258 aa16.28■□□□□ 0.2
COL6A1-201ENST00000361866 SNRKQ9NRH2 765 aa16.28■□□□□ 0.2
COL6A1-201ENST00000361866 U2AF2P26368 475 aaKnown RBP eCLIP16.27■□□□□ 0.2
COL6A1-201ENST00000361866 PIP4K2AP48426 406 aaPredicted RBP16.27■□□□□ 0.2
COL6A1-201ENST00000361866 ABCC4O15439 1325 aa16.27■□□□□ 0.2
COL6A1-201ENST00000361866 CHL1O00533 1208 aa16.27■□□□□ 0.2
COL6A1-201ENST00000361866 RIOK3O14730 519 aaKnown RBP16.27■□□□□ 0.2
COL6A1-201ENST00000361866 CCDC158Q5M9N0 1113 aa16.27■□□□□ 0.2
COL6A1-201ENST00000361866 AMOTL2Q9Y2J4 779 aa16.27■□□□□ 0.2
COL6A1-201ENST00000361866 EVA1CP58658 441 aa16.27■□□□□ 0.19
COL6A1-201ENST00000361866 JMYQ8N9B5 988 aa16.27■□□□□ 0.19
COL6A1-201ENST00000361866 SOS1Q07889 1333 aaPredicted RBP16.26■□□□□ 0.19
COL6A1-201ENST00000361866 PIK3R4Q99570 1358 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 GOLIM4O00461 696 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 TMCO3Q6UWJ1 677 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 PIBF1Q8WXW3 757 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 C8orf76Q96K31 380 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 EYA1Q99502 592 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 CEP126Q9P2H0 1117 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 KDM5DQ9BY66 1539 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 NMIQ13287 307 aaPredicted RBP16.26■□□□□ 0.19
COL6A1-201ENST00000361866 CHST3Q7LGC8 479 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 ZSWIM4Q9H7M6 989 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 SNX14Q9Y5W7 946 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 MAST1Q9Y2H9 1570 aa16.26■□□□□ 0.19
COL6A1-201ENST00000361866 RIMS2Q9UQ26 1411 aa16.25■□□□□ 0.19
COL6A1-201ENST00000361866 UBE3BQ7Z3V4 1068 aa16.25■□□□□ 0.19
COL6A1-201ENST00000361866 NUP133Q8WUM0 1156 aa16.25■□□□□ 0.19
COL6A1-201ENST00000361866 KLHL10Q6JEL2 608 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 ZNF500O60304 480 aaPredicted RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 IDH1O75874 414 aaKnown RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 PDIA4P13667 645 aaKnown RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 GTF2F1P35269 517 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 UNC5CLQ8IV45 518 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 MYRIPQ8NFW9 859 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 U3KPZ7 1027 aaPredicted RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 ADGBQ8N7X0 1667 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 MARCH6O60337 910 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 NBPF7P0C2Y1 421 aaPredicted RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 SNW1Q13573 536 aaKnown RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 STX1AQ16623 288 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 CREB3L3Q68CJ9 461 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 LARP1Q6PKG0 1096 aaKnown RBP16.24■□□□□ 0.19
COL6A1-201ENST00000361866 UGGT1Q9NYU2 1555 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 A0A087WZG4 1122 aa16.24■□□□□ 0.19
COL6A1-201ENST00000361866 SLC3A2P08195 630 aaKnown RBP16.23■□□□□ 0.19
COL6A1-201ENST00000361866 AOPEPQ8N6M6 819 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 CPLX3Q8WVH0 158 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 ATP10AO60312 1499 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 CCP110O43303 1012 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 CCDC57Q2TAC2 916 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 CNNM1Q9NRU3 951 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 RTL1A6NKG5 1358 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 ZMYM3Q14202 1370 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 IFIT1P09914 478 aaKnown RBP16.23■□□□□ 0.19
COL6A1-201ENST00000361866 TATP17735 454 aaPredicted RBP16.23■□□□□ 0.19
COL6A1-201ENST00000361866 CCDC144CPQ8IYA2 1237 aa16.23■□□□□ 0.19
COL6A1-201ENST00000361866 MAP3K19Q56UN5 1328 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 NPHP3Q7Z494 1330 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 SGSM2O43147 1006 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 CABP4P57796 275 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 Q6ZUG5 572 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 KLHDC4Q8TBB5 520 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 NPATQ14207 1427 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 NAP1L1P55209 391 aaKnown RBP16.22■□□□□ 0.19
COL6A1-201ENST00000361866 SLC39A6Q13433 755 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 PPFIBP1Q86W92 1011 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 ZFP91Q96JP5 570 aaPredicted RBP16.22■□□□□ 0.19
COL6A1-201ENST00000361866 FAM227BQ96M60 508 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 TBC1D2BQ9UPU7 963 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 ZNF518AQ6AHZ1 1483 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 CLSTN1O94985 981 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 VPS37DQ86XT2 251 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 BBXQ8WY36 941 aaPredicted RBP16.22■□□□□ 0.19
COL6A1-201ENST00000361866 CEP170Q5SW79 1584 aa16.22■□□□□ 0.19
COL6A1-201ENST00000361866 SMTNL1A8MU46 457 aa16.21■□□□□ 0.19
COL6A1-201ENST00000361866 CAGE1Q8TC20 777 aa16.21■□□□□ 0.19
COL6A1-201ENST00000361866 ERCC4Q92889 916 aaPredicted RBP16.21■□□□□ 0.19
COL6A1-201ENST00000361866 NDUFB9Q9Y6M9 179 aa16.21■□□□□ 0.19
COL6A1-201ENST00000361866 TOP1P11387 765 aaKnown RBP16.21■□□□□ 0.19
COL6A1-201ENST00000361866 LMOD1P29536 600 aaPredicted RBP16.21■□□□□ 0.19
COL6A1-201ENST00000361866 LRMPQ12912 555 aa16.21■□□□□ 0.19
COL6A1-201ENST00000361866 PAXBP1Q9Y5B6 917 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms