RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 ZNF644Q9H582 1327 aaPredicted RBP11.15□□□□□ -0.63
CUX1-203ENST00000360264 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.15□□□□□ -0.637e-6■□□□□ 9.2
CUX1-203ENST00000360264 DMRT2Q9Y5R5 561 aa11.15□□□□□ -0.63
CUX1-203ENST00000360264 V9GYY5 206 aaPredicted RBP11.15□□□□□ -0.63
CUX1-203ENST00000360264 MACROD2A1Z1Q3 448 aa11.14□□□□□ -0.63
CUX1-203ENST00000360264 CAMSAP2Q08AD1 1489 aa11.14□□□□□ -0.63
CUX1-203ENST00000360264 GTPBP4Q9BZE4 634 aaKnown RBP11.14□□□□□ -0.63
CUX1-203ENST00000360264 SSRP1Q08945 709 aaKnown RBP11.14□□□□□ -0.63
CUX1-203ENST00000360264 DBF4Q9UBU7 674 aaPredicted RBP11.14□□□□□ -0.63
CUX1-203ENST00000360264 SYCP3Q8IZU3 236 aa11.14□□□□□ -0.63
CUX1-203ENST00000360264 CEP112Q8N8E3 955 aa11.14□□□□□ -0.63
CUX1-203ENST00000360264 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.14□□□□□ -0.634e-6■■■■□ 23.2
CUX1-203ENST00000360264 SAMM50Q9Y512 469 aa11.14□□□□□ -0.63
CUX1-203ENST00000360264 RRP9O43818 475 aaKnown RBP11.14□□□□□ -0.63
CUX1-203ENST00000360264 TBCAO75347 108 aaKnown RBP11.14□□□□□ -0.63
CUX1-203ENST00000360264 FMNL3Q8IVF7 1028 aa11.14□□□□□ -0.63
CUX1-203ENST00000360264 TTC21BQ7Z4L5 1316 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 HDAC9Q9UKV0 1011 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 BCL11BQ9C0K0 894 aaPredicted RBP11.13□□□□□ -0.63
CUX1-203ENST00000360264 GOPCQ9HD26 462 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 MTIF2P46199 727 aaKnown RBP11.13□□□□□ -0.63
CUX1-203ENST00000360264 RAD54L2Q9Y4B4 1467 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 EVI5LQ96CN4 794 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 STMN4Q9H169 189 aaPredicted RBP11.13□□□□□ -0.63
CUX1-203ENST00000360264 LIMCH1Q9UPQ0 1083 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 AFAP1Q8N556 730 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 CCDC113Q9H0I3 377 aa11.13□□□□□ -0.63
CUX1-203ENST00000360264 WDR78Q5VTH9 848 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 CNNM3Q8NE01 707 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 ANKS4BQ8N8V4 417 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 LRSAM1Q6UWE0 723 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 BCAR3O75815 825 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 MRC2Q9UBG0 1479 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 MFSD6Q6ZSS7 791 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 KRT23Q9C075 422 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 MAP4K4O95819 1239 aaPredicted RBP11.12□□□□□ -0.63
CUX1-203ENST00000360264 CCDC40Q4G0X9 1142 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 SPINK5Q9NQ38 1064 aaPredicted RBP11.12□□□□□ -0.63
CUX1-203ENST00000360264 RBM27Q9P2N5 1060 aaKnown RBP11.12□□□□□ -0.63
CUX1-203ENST00000360264 ZFYP08048 801 aaPredicted RBP11.12□□□□□ -0.63
CUX1-203ENST00000360264 ST5P78524 1137 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 GNAQP50148 359 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 PPP1R42Q7Z4L9 355 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 FILIP1Q7Z7B0 1213 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 UBE4AQ14139 1066 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 DNAAF4Q8WXU2 420 aa11.12□□□□□ -0.63
CUX1-203ENST00000360264 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.12□□□□□ -0.638e-7■■□□□ 12.7
CUX1-203ENST00000360264 TROQ12816 1431 aaPredicted RBP11.11□□□□□ -0.63
CUX1-203ENST00000360264 PRC1O43663 620 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 CTAGE1Q96RT6 745 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 MSANTD4Q8NCY6 345 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 RAB3IL1Q8TBN0 382 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 BICD1Q96G01 975 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 DHX29Q7Z478 1369 aaKnown RBP11.11□□□□□ -0.63
CUX1-203ENST00000360264 MINDY4BA8MYZ0 360 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 CKAP4Q07065 602 aaKnown RBP11.11□□□□□ -0.63
CUX1-203ENST00000360264 IFIT3O14879 490 aaKnown RBP11.11□□□□□ -0.63
CUX1-203ENST00000360264 NSD2O96028 1365 aa11.11□□□□□ -0.63
CUX1-203ENST00000360264 APBB1IPQ7Z5R6 666 aaPredicted RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 CGNQ9P2M7 1197 aaKnown RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 URB1O60287 2271 aaKnown RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 ESPNB1AK53 854 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 CAMK4Q16566 473 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 JAKMIP2Q96AA8 810 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 BOLA2Q9H3K6 86 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 MRPS9P82933 396 aaKnown RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 CNNM2Q9H8M5 875 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 CEP83Q9Y592 693 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 CCDC82Q8N4S0 544 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 GOLGA8AA7E2F4 631 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 CWC25Q9NXE8 425 aaPredicted RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 CDCA7LQ96GN5 454 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 CCDC77Q9BR77 488 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 DDX23Q9BUQ8 820 aaKnown RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 NSD3Q9BZ95 1437 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 CTR9Q6PD62 1173 aa11.1□□□□□ -0.63
CUX1-203ENST00000360264 DDX19AQ9NUU7 478 aaKnown RBP11.1□□□□□ -0.63
CUX1-203ENST00000360264 MCM4P33991 863 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 TMTC2Q8N394 836 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 TUBB4BP68371 445 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 BACH2Q9BYV9 841 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 TRMT112Q9UI30 125 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 CFTRP13569 1480 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 NKTRP30414 1462 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 RRS1Q15050 365 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 UBA7P41226 1012 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 TDRD12Q587J7 1177 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 PRPF40BQ6NWY9 871 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 PAXIP1Q6ZW49 1069 aaPredicted RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 DDX46Q7L014 1031 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 NSRP1Q9H0G5 558 aaKnown RBP11.09□□□□□ -0.63
CUX1-203ENST00000360264 SELENOOQ9BVL4 669 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 KAT14Q9H8E8 782 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 NCOA7Q8NI08 942 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 IL1RAPL2Q9NP60 686 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 MCM5P33992 734 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 PIK3R4Q99570 1358 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 BCCIPQ9P287 314 aaKnown RBP eCLIP11.09□□□□□ -0.63
CUX1-203ENST00000360264 ODF2LQ9ULJ1 636 aa11.09□□□□□ -0.63
CUX1-203ENST00000360264 RFC4P35249 363 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms