RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PAFAH1B1P43034 410 aa22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 FBXO31Q5XUX0 539 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 CCDC12Q8WUD4 166 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 ARFGAP3Q9NP61 516 aa22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.65■■□□□ 1.226e-10■■■■■ 64.9
CCDC88B-202ENST00000356786 BMP2KQ9NSY1 1161 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-202ENST00000356786 DNAI1Q9UI46 699 aa22.64■■□□□ 1.22
CCDC88B-202ENST00000356786 GNAT3A8MTJ3 354 aa22.64■■□□□ 1.22
CCDC88B-202ENST00000356786 ISM2Q6H9L7 571 aa22.64■■□□□ 1.22
CCDC88B-202ENST00000356786 PIBF1Q8WXW3 757 aa22.64■■□□□ 1.22
CCDC88B-202ENST00000356786 NUP88Q99567 741 aaPredicted RBP22.64■■□□□ 1.22
CCDC88B-202ENST00000356786 SOGA3Q5TF21 947 aa22.64■■□□□ 1.21
CCDC88B-202ENST00000356786 ASXL2Q76L83 1435 aa22.64■■□□□ 1.21
CCDC88B-202ENST00000356786 CTR9Q6PD62 1173 aa22.63■■□□□ 1.21
CCDC88B-202ENST00000356786 GNL3LQ9NVN8 582 aaKnown RBP22.63■■□□□ 1.21
CCDC88B-202ENST00000356786 LUZP1Q86V48 1076 aa22.63■■□□□ 1.21
CCDC88B-202ENST00000356786 ECHDC1Q9NTX5 307 aa22.63■■□□□ 1.21
CCDC88B-202ENST00000356786 SEPT11Q9NVA2 429 aaKnown RBP22.63■■□□□ 1.21
CCDC88B-202ENST00000356786 TATP17735 454 aaPredicted RBP22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 MICALCLQ6ZW33 695 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 ATF3P18847 181 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 DNA2P51530 1060 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 MNAT1P51948 309 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 DACT1Q9NYF0 836 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 FAM135AQ9P2D6 1515 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 NECAB1Q8N987 351 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 SLU7O95391 586 aaKnown RBP22.62■■□□□ 1.21
CCDC88B-202ENST00000356786 DYDC1Q8WWB3 177 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 CCDC61Q9Y6R9 512 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 CCDC82Q8N4S0 544 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 CCDC113Q9H0I3 377 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 DISP3Q9P2K9 1392 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 PPFIA3O75145 1194 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 YEATS4O95619 227 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 MCM6Q14566 821 aa22.61■■□□□ 1.21
CCDC88B-202ENST00000356786 PTPRCP08575 1304 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 CCDC85AQ96PX6 553 aaPredicted RBP22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 EMILIN1Q9Y6C2 1016 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 AIDAQ96BJ3 306 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 MAP2K1Q02750 393 aaPredicted RBP22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 ESCO1Q5FWF5 840 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 FLIIQ13045 1269 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 EVI5LQ96CN4 794 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 TNNQ9UQP3 1299 aa22.6■■□□□ 1.21
CCDC88B-202ENST00000356786 WAPLQ7Z5K2 1190 aa22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 ZGPATQ8N5A5 531 aaKnown RBP22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 KDM5BQ9UGL1 1544 aa22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 MPHOSPH8Q99549 860 aa22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 DNAJC25Q9H1X3 360 aa22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 POLR3DP05423 398 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 CABP4P57796 275 aa22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 FKBP15Q5T1M5 1219 aa22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 SMAP1Q8IYB5 467 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 USO1O60763 962 aaKnown RBP22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 DNM1Q05193 864 aaKnown RBP22.59■■□□□ 1.21
CCDC88B-202ENST00000356786 NOS1P29475 1434 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 POGZQ7Z3K3 1410 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 GOLGA8BA8MQT2 603 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 RLBP1P12271 317 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 DNAAF4Q8WXU2 420 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 TRAPPC8Q9Y2L5 1435 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 LIG1P18858 919 aa22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 SPINK5Q9NQ38 1064 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-202ENST00000356786 CACNA2D4Q7Z3S7 1137 aa22.58■■□□□ 1.2
CCDC88B-202ENST00000356786 DUOX2Q9NRD8 1548 aa22.58■■□□□ 1.2
CCDC88B-202ENST00000356786 IFFO1Q0D2I5 559 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 SPECC1Q5M775 1068 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 PTGS1P23219 599 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 TICAM2Q86XR7 235 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 MBIPQ9NS73 344 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 BCCIPQ9P287 314 aaKnown RBP eCLIP22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 IFIT1P09914 478 aaKnown RBP22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 PDE1AP54750 535 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 ANAPC15P60006 121 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 RSPH14Q9UHP6 348 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 RBM25P49756 843 aaKnown RBP22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 ATP2B2Q01814 1243 aa22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 ZSCAN16Q9H4T2 348 aaPredicted RBP22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 RNF216Q9NWF9 866 aaPredicted RBP22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 SCAF11Q99590 1463 aaKnown RBP22.57■■□□□ 1.2
CCDC88B-202ENST00000356786 ARHGAP45Q92619 1136 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 IL16Q14005 1332 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 GTF2A1P52655 376 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 UBASH3AP57075 661 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 ESYT1Q9BSJ8 1104 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 F13A1P00488 732 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 FEZ1Q99689 392 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 WDR7Q9Y4E6 1490 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 HLTFQ14527 1009 aaKnown RBP eCLIP22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 TCEANC2Q96MN5 208 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 RBSNQ9H1K0 784 aa22.56■■□□□ 1.2
CCDC88B-202ENST00000356786 NUDT16Q96DE0 195 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 NEK1Q96PY6 1258 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 ORC3Q9UBD5 711 aaPredicted RBP22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 CCDC196A0A1B0GTZ2 297 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 TYRO3Q06418 890 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 CCDC102BQ68D86 513 aa22.55■■□□□ 1.2
CCDC88B-202ENST00000356786 ANKRD18AQ8IVF6 992 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms