RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 HOMER2Q9NSB8 354 aa15.27■□□□□ 0.03
COL6A3-202ENST00000347401 ATAD2BQ9ULI0 1458 aa15.27■□□□□ 0.03
COL6A3-202ENST00000347401 SLU7O95391 586 aaKnown RBP15.27■□□□□ 0.03
COL6A3-202ENST00000347401 A0A1B0GUL7 405 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 MX1P20591 662 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 SLC4A2P04920 1241 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 TDO2P48775 406 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 FAM200AQ8TCP9 573 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 TACC1O75410 805 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 KRT83P78385 493 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 AACSQ86V21 672 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 CTAGE15A4D2H0 777 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 CTAGE8P0CG41 777 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 HDXQ7Z353 690 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 CTAGE6Q86UF2 777 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 CTAGE4Q8IX94 777 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 JADE2Q9NQC1 790 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 MKRN1Q9UHC7 482 aaKnown RBP15.26■□□□□ 0.03
COL6A3-202ENST00000347401 ALDH3A1P30838 453 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 MAP3K9P80192 1104 aa15.26■□□□□ 0.03
COL6A3-202ENST00000347401 PAIP2Q9BPZ3 127 aaKnown RBP15.26■□□□□ 0.03
COL6A3-202ENST00000347401 STX6O43752 255 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 IQCGQ9H095 443 aaKnown RBP15.25■□□□□ 0.03
COL6A3-202ENST00000347401 ARHGAP25P42331 645 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 EXOSC9Q06265 439 aaKnown RBP15.25■□□□□ 0.03
COL6A3-202ENST00000347401 HMOX1P09601 288 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 LIG1P18858 919 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 PRKAR2BP31323 418 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 NDC80O14777 642 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 SRGAP3O43295 1099 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 MAATS1Q7Z4T9 603 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 TMCO5BA8MYB1 307 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 KRT86O43790 486 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 NBPF11Q86T75 865 aa15.25■□□□□ 0.03
COL6A3-202ENST00000347401 XPCQ01831 940 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-202ENST00000347401 MAP4K4O95819 1239 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 LACTBP83111 547 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 LUC7L2Q9Y383 392 aaKnown RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 CAMSAP2Q08AD1 1489 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 CAPN2P17655 700 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 NAP1L3Q99457 506 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 MPHOSPH8Q99549 860 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 TCP11L1Q9NUJ3 509 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 CTNNA2P26232 953 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 SPATS2Q86XZ4 545 aaKnown RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 A0A1W2PRG0 241 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 SLFN5Q08AF3 891 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 CCDC129Q6ZRS4 1044 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 CTNNBL1Q8WYA6 563 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 TBC1D32Q96NH3 1257 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 ZHX3Q9H4I2 956 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 SNX21Q969T3 373 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 CWC27Q6UX04 472 aaKnown RBP15.24■□□□□ 0.03
COL6A3-202ENST00000347401 TBC1D5Q92609 795 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 STRN4Q9NRL3 753 aa15.24■□□□□ 0.03
COL6A3-202ENST00000347401 KIAA1524Q8TCG1 905 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 MIPOL1Q8TD10 442 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 NECTIN2Q92692 538 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 CEP126Q9P2H0 1117 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 ANAPC4Q9UJX5 808 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 NOLC1Q14978 699 aaKnown RBP eCLIP15.23■□□□□ 0.03
COL6A3-202ENST00000347401 IQCA1Q86XH1 822 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 CALML4Q96GE6 196 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 FAM114A2Q9NRY5 505 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 ATP11AP98196 1134 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 UBE4AQ14139 1066 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 HDAC9Q9UKV0 1011 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 VAV2P52735 878 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 CCDC102BQ68D86 513 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 PPP1R14CQ8TAE6 165 aa15.23■□□□□ 0.03
COL6A3-202ENST00000347401 GNG11P61952 73 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 CNGA1P29973 690 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 SETD1BQ9UPS6 1966 aaKnown RBP15.22■□□□□ 0.03
COL6A3-202ENST00000347401 CACNA2D3Q8IZS8 1091 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 BAG4O95429 457 aaKnown RBP15.22■□□□□ 0.03
COL6A3-202ENST00000347401 TRAF1Q13077 416 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 AQRO60306 1485 aaKnown RBP eCLIP15.22■□□□□ 0.03
COL6A3-202ENST00000347401 STK3Q13188 491 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 ZSCAN23Q3MJ62 389 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 THOC2Q8NI27 1593 aaKnown RBP15.22■□□□□ 0.03
COL6A3-202ENST00000347401 SETDB1Q15047 1291 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 CCDC38Q502W7 563 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 TMC6Q7Z403 805 aa15.22■□□□□ 0.03
COL6A3-202ENST00000347401 EPRSP07814 1512 aaKnown RBP15.22■□□□□ 0.03
COL6A3-202ENST00000347401 CLGNO14967 610 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 MYO1BO43795 1136 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-202ENST00000347401 AIDAQ96BJ3 306 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 SAMD15Q9P1V8 674 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 SLF2Q8IX21 1173 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 ARID4AP29374 1257 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-202ENST00000347401 MAPK8IP2Q13387 824 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-202ENST00000347401 ATP2A2P16615 1042 aaKnown RBP15.21■□□□□ 0.03
COL6A3-202ENST00000347401 EVI5LQ96CN4 794 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 IL16Q14005 1332 aa15.21■□□□□ 0.03
COL6A3-202ENST00000347401 TTF1Q15361 905 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-202ENST00000347401 TRIM7Q9C029 511 aa15.21■□□□□ 0.02
COL6A3-202ENST00000347401 ZNF76P36508 570 aa15.21■□□□□ 0.02
COL6A3-202ENST00000347401 ERCC6LQ2NKX8 1250 aa15.21■□□□□ 0.02
COL6A3-202ENST00000347401 LMNTD2Q8IXW0 634 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms