RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 HOXB7P09629 217 aa9.71□□□□□ -0.86
ZNF540-202ENST00000343599 ITGAEP38570 1179 aa9.71□□□□□ -0.86
ZNF540-202ENST00000343599 ATF5Q9Y2D1 282 aaPredicted RBP9.71□□□□□ -0.86
ZNF540-202ENST00000343599 PITPNM2Q9BZ72 1349 aa9.7□□□□□ -0.86
ZNF540-202ENST00000343599 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.7□□□□□ -0.86
ZNF540-202ENST00000343599 IL13P35225 146 aa9.7□□□□□ -0.86
ZNF540-202ENST00000343599 CRAMP1Q96RY5 1269 aa9.7□□□□□ -0.86
ZNF540-202ENST00000343599 ECE1P42892 770 aa9.7□□□□□ -0.86
ZNF540-202ENST00000343599 GAS2L2Q8NHY3 880 aa9.7□□□□□ -0.86
ZNF540-202ENST00000343599 PNNQ9H307 717 aaKnown RBP9.7□□□□□ -0.86
ZNF540-202ENST00000343599 FZD9O00144 591 aa9.69□□□□□ -0.86
ZNF540-202ENST00000343599 CYP19A1P11511 503 aaPredicted RBP9.69□□□□□ -0.86
ZNF540-202ENST00000343599 ZNF428Q96B54 188 aa9.69□□□□□ -0.86
ZNF540-202ENST00000343599 ZMYND15Q9H091 742 aa9.69□□□□□ -0.86
ZNF540-202ENST00000343599 NOP58Q9Y2X3 529 aaKnown RBP9.69□□□□□ -0.86
ZNF540-202ENST00000343599 NUTM2FA1L443 756 aa9.69□□□□□ -0.86
ZNF540-202ENST00000343599 ITPK1Q13572 414 aa9.69□□□□□ -0.86
ZNF540-202ENST00000343599 FKBP4Q02790 459 aaKnown RBP eCLIP9.68□□□□□ -0.86
ZNF540-202ENST00000343599 C16orf71Q8IYS4 520 aaPredicted RBP9.68□□□□□ -0.86
ZNF540-202ENST00000343599 EYA1Q99502 592 aa9.68□□□□□ -0.86
ZNF540-202ENST00000343599 NYXQ9GZU5 481 aa9.68□□□□□ -0.86
ZNF540-202ENST00000343599 NPR1P16066 1061 aa9.68□□□□□ -0.86
ZNF540-202ENST00000343599 BRPF1P55201 1214 aaPredicted RBP9.68□□□□□ -0.86
ZNF540-202ENST00000343599 ZCCHC17Q9NP64 241 aaKnown RBP9.68□□□□□ -0.86
ZNF540-202ENST00000343599 HSP90B1P14625 803 aaKnown RBP9.67□□□□□ -0.86
ZNF540-202ENST00000343599 TTLL6Q8N841 843 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 RSPH6AQ9H0K4 717 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 WBP1LQ9NX94 342 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 RPS12P25398 132 aaKnown RBP9.67□□□□□ -0.86
ZNF540-202ENST00000343599 MASTLQ96GX5 879 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 ZNF652Q9Y2D9 606 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 ALDH1B1P30837 517 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 EIF4A2Q14240 407 aaKnown RBP9.67□□□□□ -0.86
ZNF540-202ENST00000343599 PTF1AQ7RTS3 328 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 BBXQ8WY36 941 aaPredicted RBP9.67□□□□□ -0.86
ZNF540-202ENST00000343599 ARHGEF1Q92888 912 aaKnown RBP9.67□□□□□ -0.86
ZNF540-202ENST00000343599 SLC12A5Q9H2X9 1139 aa9.67□□□□□ -0.86
ZNF540-202ENST00000343599 DPY19L2Q6NUT2 758 aa9.66□□□□□ -0.86
ZNF540-202ENST00000343599 DHX37Q8IY37 1157 aaKnown RBP9.66□□□□□ -0.86
ZNF540-202ENST00000343599 GPC2Q8N158 579 aa9.66□□□□□ -0.86
ZNF540-202ENST00000343599 FKBP1AP62942 108 aaKnown RBP9.65□□□□□ -0.86
ZNF540-202ENST00000343599 SAFB2Q14151 953 aaKnown RBP eCLIP9.65□□□□□ -0.86
ZNF540-202ENST00000343599 STARD3NLO95772 234 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 SLC4A2P04920 1241 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 RFC4P35249 363 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 CARD14Q9BXL6 1004 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 RNMTO43148 476 aaKnown RBP9.64□□□□□ -0.87
ZNF540-202ENST00000343599 MMP10P09238 476 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 CCDC93Q567U6 631 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 TLL2Q9Y6L7 1015 aa9.64□□□□□ -0.87
ZNF540-202ENST00000343599 ATP6V1AP38606 617 aa9.63□□□□□ -0.87
ZNF540-202ENST00000343599 RTL5Q5HYW3 569 aaPredicted RBP9.63□□□□□ -0.87
ZNF540-202ENST00000343599 DPEP1P16444 411 aa9.63□□□□□ -0.87
ZNF540-202ENST00000343599 CRKLP46109 303 aaKnown RBP9.63□□□□□ -0.87
ZNF540-202ENST00000343599 PARP10Q53GL7 1025 aa9.63□□□□□ -0.87
ZNF540-202ENST00000343599 C9orf131Q5VYM1 1079 aa9.63□□□□□ -0.87
ZNF540-202ENST00000343599 POTECB2RU33 542 aa9.62□□□□□ -0.87
ZNF540-202ENST00000343599 H0YIN7 160 aa9.62□□□□□ -0.87
ZNF540-202ENST00000343599 C1orf141Q5JVX7 400 aa9.62□□□□□ -0.87
ZNF540-202ENST00000343599 GPR153Q6NV75 609 aa9.62□□□□□ -0.87
ZNF540-202ENST00000343599 TMEM88BA6NKF7 163 aa9.62□□□□□ -0.87
ZNF540-202ENST00000343599 A0A1W2PPC1 479 aa9.61□□□□□ -0.87
ZNF540-202ENST00000343599 DDR1Q08345 913 aa9.61□□□□□ -0.87
ZNF540-202ENST00000343599 SAMD1Q6SPF0 538 aaPredicted RBP9.61□□□□□ -0.87
ZNF540-202ENST00000343599 DPF2Q92785 391 aa9.61□□□□□ -0.87
ZNF540-202ENST00000343599 SLC4A9Q96Q91 983 aa9.61□□□□□ -0.87
ZNF540-202ENST00000343599 ST5P78524 1137 aa9.61□□□□□ -0.87
ZNF540-202ENST00000343599 ZNF496Q96IT1 587 aaPredicted RBP9.61□□□□□ -0.87
ZNF540-202ENST00000343599 PDGFDQ9GZP0 370 aaPredicted RBP9.61□□□□□ -0.87
ZNF540-202ENST00000343599 GNPATO15228 680 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 ITGBL1O95965 494 aaPredicted RBP9.6□□□□□ -0.87
ZNF540-202ENST00000343599 CABP4P57796 275 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 FGD1P98174 961 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 SPRYD3Q8NCJ5 442 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 BCL2L12Q9HB09 334 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 ST20-MTHFSA0A0A6YYL1 179 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 TRIM28Q13263 835 aaKnown RBP9.6□□□□□ -0.87
ZNF540-202ENST00000343599 HSP90AB3PQ58FF7 597 aa9.6□□□□□ -0.87
ZNF540-202ENST00000343599 FAM182BQ5T319 152 aa9.59□□□□□ -0.87
ZNF540-202ENST00000343599 PPP2R3BQ9Y5P8 575 aa9.59□□□□□ -0.87
ZNF540-202ENST00000343599 DDX60LQ5H9U9 1706 aaKnown RBP9.59□□□□□ -0.87
ZNF540-202ENST00000343599 SRGNP10124 158 aa9.59□□□□□ -0.87
ZNF540-202ENST00000343599 HSPA8P11142 646 aaKnown RBP9.59□□□□□ -0.87
ZNF540-202ENST00000343599 MAPK8IP2Q13387 824 aaPredicted RBP9.59□□□□□ -0.87
ZNF540-202ENST00000343599 ABCC12Q96J65 1359 aa9.59□□□□□ -0.87
ZNF540-202ENST00000343599 CAMTA2O94983 1202 aa9.59□□□□□ -0.87
ZNF540-202ENST00000343599 VASPP50552 380 aaPredicted RBP9.59□□□□□ -0.87
ZNF540-202ENST00000343599 C15orf52Q6ZUT6 534 aaKnown RBP9.59□□□□□ -0.87
ZNF540-202ENST00000343599 RPAP1Q9BWH6 1393 aaPredicted RBP9.59□□□□□ -0.88
ZNF540-202ENST00000343599 ACSBG1Q96GR2 724 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 NFKBIEO00221 500 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 ZPR1O75312 459 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 FCHSD2O94868 740 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 NUTM2GQ5VZR2 741 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 AIDAQ96BJ3 306 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 FMNL2Q96PY5 1086 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 ZNF236Q9UL36 1845 aa9.58□□□□□ -0.88
ZNF540-202ENST00000343599 CASP8AP2Q9UKL3 1982 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 PRMT2P55345 433 aa9.57□□□□□ -0.88
ZNF540-202ENST00000343599 PDE4CQ08493 712 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms