RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 RIMS1Q86UR5 1692 aaKnown RBP11.5□□□□□ -0.57
HOXA1-201ENST00000343060 CNTROBQ8N137 903 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 STK31Q9BXU1 1019 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 SENP3Q9H4L4 574 aaPredicted RBP11.5□□□□□ -0.57
HOXA1-201ENST00000343060 ZSWIM6Q9HCJ5 1215 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 TNNT1P13805 278 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 KRT85P78386 507 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 CCDC83Q8IWF9 413 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 KIF18AQ8NI77 898 aa11.5□□□□□ -0.57
HOXA1-201ENST00000343060 DDX19AQ9NUU7 478 aaKnown RBP11.5□□□□□ -0.57
HOXA1-201ENST00000343060 LIG1P18858 919 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 CASTP20810 708 aaKnown RBP11.49□□□□□ -0.57
HOXA1-201ENST00000343060 LRMPQ12912 555 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 LUZP1Q86V48 1076 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 CCDC112Q8NEF3 446 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 SIRT1Q96EB6 747 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 C16orf45Q96MC5 204 aaPredicted RBP11.49□□□□□ -0.57
HOXA1-201ENST00000343060 USP44Q9H0E7 712 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 FAM193AP78312 1265 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 CCDC30Q5VVM6 783 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 CLSTN2Q9H4D0 955 aa11.49□□□□□ -0.57
HOXA1-201ENST00000343060 ZNF771Q7L3S4 317 aaPredicted RBP11.48□□□□□ -0.57
HOXA1-201ENST00000343060 NUTM1Q86Y26 1132 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 RHPN1Q8TCX5 695 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 IL1RAPL2Q9NP60 686 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 PDRG1Q9NUG6 133 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 CAVIN2O95810 425 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 SLFNL1Q499Z3 407 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 ANO6Q4KMQ2 910 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 SARM1Q6SZW1 724 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 ZNF397Q8NF99 534 aaPredicted RBP11.48□□□□□ -0.57
HOXA1-201ENST00000343060 KIF1BPQ96EK5 621 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 DNAJC5Q9H3Z4 198 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 MIS18AQ9NYP9 233 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 MAP3K19Q56UN5 1328 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 NPHP3Q7Z494 1330 aa11.48□□□□□ -0.57
HOXA1-201ENST00000343060 HTATSF1O43719 755 aaKnown RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 RAPGEF3O95398 923 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 UBTFL1P0CB47 393 aaPredicted RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 RBM6P78332 1123 aaKnown RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 CREBRFQ8IUR6 639 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 KCND1Q9NSA2 647 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 NRBP1Q9UHY1 535 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 TTC41PQ6P2S7 1318 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 NEMFO60524 1076 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 GTF2E1P29083 439 aaPredicted RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 TERF2Q15554 542 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 ME3Q16798 604 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 MTHFSDQ2M296 383 aaKnown RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 NYAP1Q6ZVC0 841 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 KRT222Q8N1A0 295 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 CACTINQ8WUQ7 758 aaKnown RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 LARP6Q9BRS8 491 aaKnown RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 SCAND2PQ9GZW5 306 aaPredicted RBP11.47□□□□□ -0.57
HOXA1-201ENST00000343060 TNMDQ9H2S6 317 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 CYP46A1Q9Y6A2 500 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 PRR36Q9H6K5 1346 aa11.47□□□□□ -0.57
HOXA1-201ENST00000343060 VPS37CA5D8V6 355 aaPredicted RBP11.46□□□□□ -0.57
HOXA1-201ENST00000343060 CPA1P15085 419 aa11.46□□□□□ -0.57
HOXA1-201ENST00000343060 PDCP20941 246 aa11.46□□□□□ -0.57
HOXA1-201ENST00000343060 JAKMIP1Q96N16 626 aaKnown RBP11.46□□□□□ -0.57
HOXA1-201ENST00000343060 PPP6R1Q9UPN7 881 aa11.46□□□□□ -0.57
HOXA1-201ENST00000343060 IGSF3O75054 1194 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 ADCK5Q3MIX3 580 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 TPRNQ4KMQ1 711 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 FBXO31Q5XUX0 539 aaPredicted RBP11.46□□□□□ -0.58
HOXA1-201ENST00000343060 CDC37L1Q7L3B6 337 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 RUFY2Q8WXA3 655 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 TRIM5Q9C035 493 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 TMEM51Q9NW97 253 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 DACT1Q9NYF0 836 aa11.46□□□□□ -0.58
HOXA1-201ENST00000343060 METP08581 1390 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 ERBB3P21860 1342 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 NCKAP5LQ9HCH0 1330 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 FOXO3O43524 673 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 GIGYF1O75420 1035 aaPredicted RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 GLRX3O76003 335 aaKnown RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 MAP4K4O95819 1239 aaPredicted RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 NAA30Q147X3 362 aaPredicted RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 NECTIN1Q15223 517 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 HSP90AB2PQ58FF8 381 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 CEP135Q66GS9 1140 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 PPP1R42Q7Z4L9 355 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 ALDH8A1Q9H2A2 487 aaPredicted RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 BABAM1Q9NWV8 329 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 SPG7Q9UQ90 795 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 CEP170BQ9Y4F5 1589 aaPredicted RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 USP6P35125 1406 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 SURF6O75683 361 aaKnown RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 PTH1RQ03431 593 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 CCDC144BQ3MJ40 725 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 CWC27Q6UX04 472 aaKnown RBP11.45□□□□□ -0.58
HOXA1-201ENST00000343060 CCDC144CPQ8IYA2 1237 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 MRFAP1L1Q96HT8 127 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 SNRKQ9NRH2 765 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 CLIP2Q9UDT6 1046 aa11.45□□□□□ -0.58
HOXA1-201ENST00000343060 IGSF1Q8N6C5 1336 aa11.44□□□□□ -0.58
HOXA1-201ENST00000343060 CCDC66A2RUB6 948 aa11.44□□□□□ -0.58
HOXA1-201ENST00000343060 TPD52L1Q16890 204 aaPredicted RBP11.44□□□□□ -0.58
HOXA1-201ENST00000343060 KMT5BQ4FZB7 885 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms