RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SERPINA10Q9UK55 444 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 ANKRD30BQ9BXX2 1392 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 CASKIN1Q8WXD9 1431 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 SCAPERQ9BY12 1400 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 PI4KAP2A4QPH2 592 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 IFIT1P09914 478 aaKnown RBP10.08□□□□□ -0.8
RTN3-202ENST00000339997 PI4KAP1Q8N8J0 262 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 ADGRF5Q8IZF2 1346 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 LAMC3Q9Y6N6 1575 aa10.08□□□□□ -0.8
RTN3-202ENST00000339997 SHTN1A0MZ66 631 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 KIF6Q6ZMV9 814 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 C10orf67Q8IYJ2 551 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 CCDC148Q8NFR7 591 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 GAPVD1Q14C86 1478 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 RANBP6O60518 1105 aaKnown RBP10.07□□□□□ -0.8
RTN3-202ENST00000339997 CCDC178Q5BJE1 867 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 TOM1L2Q6ZVM7 507 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 OTUD7AQ8TE49 926 aaPredicted RBP10.07□□□□□ -0.8
RTN3-202ENST00000339997 TIGD1Q96MW7 591 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 JADE2Q9NQC1 790 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 POLR1AO95602 1720 aaPredicted RBP10.07□□□□□ -0.8
RTN3-202ENST00000339997 ATF3P18847 181 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 METTL24Q5JXM2 366 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 KRT222Q8N1A0 295 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 TSPYL6Q8N831 410 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 TAF4BQ92750 862 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.07□□□□□ -0.8
RTN3-202ENST00000339997 USP16Q9Y5T5 823 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 U3KPZ7 1027 aaPredicted RBP10.07□□□□□ -0.8
RTN3-202ENST00000339997 IDEP14735 1019 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 AFMP43652 599 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 PRPF4BQ13523 1007 aaKnown RBP10.07□□□□□ -0.8
RTN3-202ENST00000339997 UBE4AQ14139 1066 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 SOGA3Q5TF21 947 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 CACNA2D4Q7Z3S7 1137 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 AOPEPQ8N6M6 819 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 MYO6Q9UM54 1294 aa10.07□□□□□ -0.8
RTN3-202ENST00000339997 ZSCAN22P10073 491 aaPredicted RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 GPIHBP1Q8IV16 184 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 NUDT16Q96DE0 195 aaKnown RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 ORC3Q9UBD5 711 aaPredicted RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 NOL7Q9UMY1 257 aaKnown RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 GOLGA6L7A0A1B0GV03 622 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 GNAT3A8MTJ3 354 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 TATP17735 454 aaPredicted RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 NUCB1Q02818 461 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 SPA17Q15506 151 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 CTR9Q6PD62 1173 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 DISP3Q9P2K9 1392 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 SF3A3Q12874 501 aaKnown RBP eCLIP10.06□□□□□ -0.8
RTN3-202ENST00000339997 BMS1Q14692 1282 aaKnown RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 KARSQ15046 597 aaKnown RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 ZBTB3Q9H5J0 574 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 CTNNA3Q9UI47 895 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 GPTP24298 496 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 IFFO1Q0D2I5 559 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 ZRSR2Q15696 482 aaKnown RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 C8orf58Q8NAV2 365 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 PUF60Q9UHX1 559 aaKnown RBP10.06□□□□□ -0.8
RTN3-202ENST00000339997 C9orf84Q5VXU9 1444 aa10.06□□□□□ -0.8
RTN3-202ENST00000339997 FYCO1Q9BQS8 1478 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 CDKL5O76039 1030 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 PRIMPOLQ96LW4 560 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 SH2B1Q9NRF2 756 aaPredicted RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 DDX19AQ9NUU7 478 aaKnown RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 USP8P40818 1118 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 UBASH3AP57075 661 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 MAP2K1Q02750 393 aaPredicted RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 ZSCAN29Q8IWY8 852 aaPredicted RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 STAC3Q96MF2 364 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 PA2G4Q9UQ80 394 aaKnown RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 CCDC96Q2M329 555 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 SYT10Q6XYQ8 523 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 NAPBQ9H115 298 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 LZTFL1Q9NQ48 299 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 IQSEC3Q9UPP2 1182 aaPredicted RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 TMCO5BA8MYB1 307 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 IFIT3O14879 490 aaKnown RBP10.05□□□□□ -0.8
RTN3-202ENST00000339997 PDE1AP54750 535 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 STX17P56962 302 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 VAT1LQ9HCJ6 419 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 ECHDC1Q9NTX5 307 aa10.05□□□□□ -0.8
RTN3-202ENST00000339997 A0A087WZG4 1122 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 KIF2AO00139 706 aaPredicted RBP10.04□□□□□ -0.8
RTN3-202ENST00000339997 TERF1P54274 439 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 MAATS1Q7Z4T9 603 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 DNAAF4Q8WXU2 420 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 CTNNBL1Q8WYA6 563 aaPredicted RBP10.04□□□□□ -0.8
RTN3-202ENST00000339997 LUC7LQ9NQ29 371 aaKnown RBP10.04□□□□□ -0.8
RTN3-202ENST00000339997 CCDC61Q9Y6R9 512 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 ZNF213O14771 459 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 RBM5P52756 815 aaKnown RBP eCLIP10.04□□□□□ -0.8
RTN3-202ENST00000339997 STX1AQ16623 288 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 ALDH1L2Q3SY69 923 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 UBE3BQ7Z3V4 1068 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 DMRT2Q9Y5R5 561 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 SBNO2Q9Y2G9 1366 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 FAM170AA1A519 330 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 RHOXF2BP0C7M4 288 aa10.04□□□□□ -0.8
RTN3-202ENST00000339997 RHOXF2Q9BQY4 288 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms