RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 CNTROBQ8N137 903 aa23.9■■□□□ 1.42
CRLF3-201ENST00000324238 STX6O43752 255 aa23.89■■□□□ 1.42
CRLF3-201ENST00000324238 DIAPH3Q9NSV4 1193 aa23.89■■□□□ 1.42
CRLF3-201ENST00000324238 ZSCAN22P10073 491 aaPredicted RBP23.89■■□□□ 1.41
CRLF3-201ENST00000324238 POLA2Q14181 598 aa23.89■■□□□ 1.41
CRLF3-201ENST00000324238 BEND3Q5T5X7 828 aa23.89■■□□□ 1.41
CRLF3-201ENST00000324238 SYAP1Q96A49 352 aaPredicted RBP23.89■■□□□ 1.41
CRLF3-201ENST00000324238 EIF4A1P60842 406 aaKnown RBP23.88■■□□□ 1.41
CRLF3-201ENST00000324238 TTC14Q96N46 770 aa23.88■■□□□ 1.41
CRLF3-201ENST00000324238 DIP2AQ14689 1571 aa23.88■■□□□ 1.41
CRLF3-201ENST00000324238 PIP4K2AP48426 406 aaPredicted RBP23.88■■□□□ 1.41
CRLF3-201ENST00000324238 LIMCH1Q9UPQ0 1083 aa23.88■■□□□ 1.41
CRLF3-201ENST00000324238 KIF13AQ9H1H9 1805 aa23.88■■□□□ 1.41
CRLF3-201ENST00000324238 SIL1Q9H173 461 aa23.88■■□□□ 1.41
CRLF3-201ENST00000324238 HTATSF1O43719 755 aaKnown RBP23.87■■□□□ 1.41
CRLF3-201ENST00000324238 GJB2P29033 226 aa23.87■■□□□ 1.41
CRLF3-201ENST00000324238 C9orf78Q9NZ63 289 aaPredicted RBP23.87■■□□□ 1.41
CRLF3-201ENST00000324238 KLHDC4Q8TBB5 520 aa23.86■■□□□ 1.41
CRLF3-201ENST00000324238 CCDC8Q9H0W5 538 aaPredicted RBP23.86■■□□□ 1.41
CRLF3-201ENST00000324238 ADCY5O95622 1261 aa23.86■■□□□ 1.41
CRLF3-201ENST00000324238 ZC3H6P61129 1189 aaKnown RBP23.86■■□□□ 1.41
CRLF3-201ENST00000324238 FAM227BQ96M60 508 aa23.86■■□□□ 1.41
CRLF3-201ENST00000324238 RAB11FIP3O75154 756 aa23.85■■□□□ 1.41
CRLF3-201ENST00000324238 KCNJ4P48050 445 aa23.85■■□□□ 1.41
CRLF3-201ENST00000324238 MAP3K2Q9Y2U5 619 aa23.85■■□□□ 1.41
CRLF3-201ENST00000324238 IP6K1Q92551 441 aa23.85■■□□□ 1.41
CRLF3-201ENST00000324238 TAF6LQ9Y6J9 622 aa23.85■■□□□ 1.41
CRLF3-201ENST00000324238 SLC39A6Q13433 755 aa23.84■■□□□ 1.41
CRLF3-201ENST00000324238 F13A1P00488 732 aa23.84■■□□□ 1.41
CRLF3-201ENST00000324238 DDX17Q92841 729 aaKnown RBP23.84■■□□□ 1.41
CRLF3-201ENST00000324238 PDRG1Q9NUG6 133 aa23.84■■□□□ 1.41
CRLF3-201ENST00000324238 HYPKQ9NX55 129 aa23.84■■□□□ 1.41
CRLF3-201ENST00000324238 AACSQ86V21 672 aa23.83■■□□□ 1.41
CRLF3-201ENST00000324238 PDCL3Q9H2J4 239 aa23.83■■□□□ 1.41
CRLF3-201ENST00000324238 CLASRPQ8N2M8 674 aaKnown RBP23.82■■□□□ 1.4
CRLF3-201ENST00000324238 PIK3C2AO00443 1686 aa23.82■■□□□ 1.4
CRLF3-201ENST00000324238 CAMK4Q16566 473 aa23.82■■□□□ 1.4
CRLF3-201ENST00000324238 CCDC183Q5T5S1 534 aa23.82■■□□□ 1.4
CRLF3-201ENST00000324238 SPC24Q8NBT2 197 aa23.82■■□□□ 1.4
CRLF3-201ENST00000324238 TLR7Q9NYK1 1049 aaKnown RBP23.82■■□□□ 1.4
CRLF3-201ENST00000324238 NDUFB9Q9Y6M9 179 aa23.82■■□□□ 1.4
CRLF3-201ENST00000324238 XRN1Q8IZH2 1706 aaKnown RBP23.82■■□□□ 1.4
CRLF3-201ENST00000324238 IFIT2P09913 472 aaKnown RBP23.82■■□□□ 1.4
CRLF3-201ENST00000324238 CCDC9Q9Y3X0 531 aaKnown RBP23.82■■□□□ 1.4
CRLF3-201ENST00000324238 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.81■■□□□ 1.4
CRLF3-201ENST00000324238 ST3GAL1Q11201 340 aa23.81■■□□□ 1.4
CRLF3-201ENST00000324238 ME3Q16798 604 aa23.81■■□□□ 1.4
CRLF3-201ENST00000324238 EDC3Q96F86 508 aaKnown RBP23.81■■□□□ 1.4
CRLF3-201ENST00000324238 AXIN2Q9Y2T1 843 aa23.81■■□□□ 1.4
CRLF3-201ENST00000324238 AP5Z1O43299 807 aa23.81■■□□□ 1.4
CRLF3-201ENST00000324238 MYL6BP14649 208 aa23.81■■□□□ 1.4
CRLF3-201ENST00000324238 STK3Q13188 491 aa23.81■■□□□ 1.4
CRLF3-201ENST00000324238 C1orf141Q5JVX7 400 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 ADCY9O60503 1353 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 NALCNQ8IZF0 1738 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 PHF14O94880 888 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 CHGBP05060 677 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 KIAA2012Q0VF49 1180 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 BOLA2Q9H3K6 86 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 TOPAZ1Q8N9V7 1692 aa23.8■■□□□ 1.4
CRLF3-201ENST00000324238 GCP02774 474 aa23.79■■□□□ 1.4
CRLF3-201ENST00000324238 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.79■■□□□ 1.4
CRLF3-201ENST00000324238 AOX1Q06278 1338 aa23.79■■□□□ 1.4
CRLF3-201ENST00000324238 GLRX3O76003 335 aaKnown RBP23.79■■□□□ 1.4
CRLF3-201ENST00000324238 MTMR6Q9Y217 621 aa23.79■■□□□ 1.4
CRLF3-201ENST00000324238 ECHDC1Q9NTX5 307 aa23.78■■□□□ 1.4
CRLF3-201ENST00000324238 TPCN1Q9ULQ1 816 aa23.78■■□□□ 1.4
CRLF3-201ENST00000324238 UBE2HP62256 183 aa23.78■■□□□ 1.4
CRLF3-201ENST00000324238 ANKLE2Q86XL3 938 aa23.78■■□□□ 1.4
CRLF3-201ENST00000324238 TFIP11Q9UBB9 837 aaKnown RBP23.78■■□□□ 1.4
CRLF3-201ENST00000324238 FMN2Q9NZ56 1722 aa23.77■■□□□ 1.4
CRLF3-201ENST00000324238 RBM8AQ9Y5S9 174 aaKnown RBP23.77■■□□□ 1.4
CRLF3-201ENST00000324238 FAM208AQ9UK61 1670 aaKnown RBP23.77■■□□□ 1.4
CRLF3-201ENST00000324238 ANKRD24Q8TF21 1146 aa23.77■■□□□ 1.4
CRLF3-201ENST00000324238 CYP46A1Q9Y6A2 500 aa23.77■■□□□ 1.4
CRLF3-201ENST00000324238 TUBGCP6Q96RT7 1819 aa23.76■■□□□ 1.39
CRLF3-201ENST00000324238 NMIQ13287 307 aaPredicted RBP23.76■■□□□ 1.39
CRLF3-201ENST00000324238 EAF2Q96CJ1 260 aaPredicted RBP23.76■■□□□ 1.39
CRLF3-201ENST00000324238 PPFIA3O75145 1194 aa23.76■■□□□ 1.39
CRLF3-201ENST00000324238 CSPP1Q1MSJ5 1256 aa23.76■■□□□ 1.39
CRLF3-201ENST00000324238 PLEKHO1Q53GL0 409 aaPredicted RBP23.76■■□□□ 1.39
CRLF3-201ENST00000324238 NWD1Q149M9 1564 aa23.75■■□□□ 1.39
CRLF3-201ENST00000324238 SUCLG2Q96I99 432 aa23.75■■□□□ 1.39
CRLF3-201ENST00000324238 CDC37L1Q7L3B6 337 aa23.75■■□□□ 1.39
CRLF3-201ENST00000324238 CKAP2LQ8IYA6 745 aa23.74■■□□□ 1.39
CRLF3-201ENST00000324238 LARP1BQ659C4 914 aaKnown RBP23.74■■□□□ 1.39
CRLF3-201ENST00000324238 SASS6Q6UVJ0 657 aa23.74■■□□□ 1.39
CRLF3-201ENST00000324238 BICC1Q9H694 974 aaKnown RBP23.74■■□□□ 1.39
CRLF3-201ENST00000324238 A0A0D9SFI3 127 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 RNMTO43148 476 aaKnown RBP23.73■■□□□ 1.39
CRLF3-201ENST00000324238 SASH1O94885 1247 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 NOLC1Q14978 699 aaKnown RBP eCLIP23.73■■□□□ 1.39
CRLF3-201ENST00000324238 CREB3L3Q68CJ9 461 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 CABLES1Q8TDN4 633 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 IL17RAQ96F46 866 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 MCM5P33992 734 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 FOSBP53539 338 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 BCL11BQ9C0K0 894 aaPredicted RBP23.73■■□□□ 1.39
CRLF3-201ENST00000324238 NLRP2Q9NX02 1062 aa23.73■■□□□ 1.39
CRLF3-201ENST00000324238 AKAP4Q5JQC9 854 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms