RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.44■■□□□ 1.82
SHMT1-201ENST00000316694 CHD2O14647 1828 aaKnown RBP26.44■■□□□ 1.82
SHMT1-201ENST00000316694 STX6O43752 255 aa26.44■■□□□ 1.82
SHMT1-201ENST00000316694 SYT1P21579 422 aa26.44■■□□□ 1.82
SHMT1-201ENST00000316694 RGPD2P0DJD1 1756 aa26.44■■□□□ 1.82
SHMT1-201ENST00000316694 MED1Q15648 1581 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-201ENST00000316694 KDM3BQ7LBC6 1761 aa26.43■■□□□ 1.82
SHMT1-201ENST00000316694 NFAT5O94916 1531 aa26.43■■□□□ 1.82
SHMT1-201ENST00000316694 DTNBO60941 627 aa26.43■■□□□ 1.82
SHMT1-201ENST00000316694 MAP3K2Q9Y2U5 619 aa26.43■■□□□ 1.82
SHMT1-201ENST00000316694 PA2G4Q9UQ80 394 aaKnown RBP26.42■■□□□ 1.82
SHMT1-201ENST00000316694 USP42Q9H9J4 1324 aaKnown RBP26.42■■□□□ 1.82
SHMT1-201ENST00000316694 LARGE1O95461 756 aa26.42■■□□□ 1.82
SHMT1-201ENST00000316694 MCM5P33992 734 aa26.42■■□□□ 1.82
SHMT1-201ENST00000316694 PTH1RQ03431 593 aa26.42■■□□□ 1.82
SHMT1-201ENST00000316694 RUFY2Q8WXA3 655 aa26.42■■□□□ 1.82
SHMT1-201ENST00000316694 DBF4Q9UBU7 674 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-201ENST00000316694 AKAP4Q5JQC9 854 aa26.41■■□□□ 1.82
SHMT1-201ENST00000316694 TMEM87AQ8NBN3 555 aa26.41■■□□□ 1.82
SHMT1-201ENST00000316694 PRPF40BQ6NWY9 871 aaKnown RBP26.41■■□□□ 1.82
SHMT1-201ENST00000316694 JAKMIP1Q96N16 626 aaKnown RBP26.41■■□□□ 1.82
SHMT1-201ENST00000316694 ECHDC1Q9NTX5 307 aa26.41■■□□□ 1.82
SHMT1-201ENST00000316694 IFIT2P09913 472 aaKnown RBP26.4■■□□□ 1.82
SHMT1-201ENST00000316694 TRHP20396 242 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-201ENST00000316694 FIBPO43427 364 aa26.4■■□□□ 1.82
SHMT1-201ENST00000316694 PROSER3Q2NL68 480 aa26.4■■□□□ 1.82
SHMT1-201ENST00000316694 CCDC183Q5T5S1 534 aa26.4■■□□□ 1.82
SHMT1-201ENST00000316694 CCDC83Q8IWF9 413 aa26.4■■□□□ 1.82
SHMT1-201ENST00000316694 HYPKQ9NX55 129 aa26.4■■□□□ 1.82
SHMT1-201ENST00000316694 F13A1P00488 732 aa26.39■■□□□ 1.82
SHMT1-201ENST00000316694 ADCK5Q3MIX3 580 aa26.39■■□□□ 1.82
SHMT1-201ENST00000316694 GLIPR1L2Q4G1C9 344 aa26.39■■□□□ 1.82
SHMT1-201ENST00000316694 PLEKHO1Q53GL0 409 aaPredicted RBP26.39■■□□□ 1.82
SHMT1-201ENST00000316694 MTX1Q13505 466 aa26.39■■□□□ 1.81
SHMT1-201ENST00000316694 CWF19L2Q2TBE0 894 aaKnown RBP26.39■■□□□ 1.81
SHMT1-201ENST00000316694 GPATCH3Q96I76 525 aa26.39■■□□□ 1.81
SHMT1-201ENST00000316694 KCNH5Q8NCM2 988 aa26.38■■□□□ 1.81
SHMT1-201ENST00000316694 DDX54Q8TDD1 881 aaKnown RBP26.38■■□□□ 1.81
SHMT1-201ENST00000316694 ORAI2Q96SN7 254 aa26.38■■□□□ 1.81
SHMT1-201ENST00000316694 PDRG1Q9NUG6 133 aa26.38■■□□□ 1.81
SHMT1-201ENST00000316694 CRYBG1Q9Y4K1 1723 aa26.38■■□□□ 1.81
SHMT1-201ENST00000316694 AACSQ86V21 672 aa26.37■■□□□ 1.81
SHMT1-201ENST00000316694 GJB2P29033 226 aa26.37■■□□□ 1.81
SHMT1-201ENST00000316694 UBE2HP62256 183 aa26.37■■□□□ 1.81
SHMT1-201ENST00000316694 CSPP1Q1MSJ5 1256 aa26.37■■□□□ 1.81
SHMT1-201ENST00000316694 C1orf141Q5JVX7 400 aa26.37■■□□□ 1.81
SHMT1-201ENST00000316694 LMOD2Q6P5Q4 547 aa26.37■■□□□ 1.81
SHMT1-201ENST00000316694 TERF1P54274 439 aa26.36■■□□□ 1.81
SHMT1-201ENST00000316694 MPNDQ8N594 471 aa26.36■■□□□ 1.81
SHMT1-201ENST00000316694 ATP6V1DQ9Y5K8 247 aa26.36■■□□□ 1.81
SHMT1-201ENST00000316694 PRAMEF22A3QJZ6 481 aa26.36■■□□□ 1.81
SHMT1-201ENST00000316694 FAM184AQ8NB25 1140 aa26.36■■□□□ 1.81
SHMT1-201ENST00000316694 CYP46A1Q9Y6A2 500 aa26.36■■□□□ 1.81
SHMT1-201ENST00000316694 RNMTO43148 476 aaKnown RBP26.35■■□□□ 1.81
SHMT1-201ENST00000316694 ALDH1L1O75891 902 aa26.35■■□□□ 1.81
SHMT1-201ENST00000316694 KSR2Q6VAB6 950 aa26.35■■□□□ 1.81
SHMT1-201ENST00000316694 ERC1Q8IUD2 1116 aa26.35■■□□□ 1.81
SHMT1-201ENST00000316694 USP25Q9UHP3 1055 aa26.35■■□□□ 1.81
SHMT1-201ENST00000316694 GCP02774 474 aa26.34■■□□□ 1.81
SHMT1-201ENST00000316694 VPS53Q5VIR6 699 aa26.34■■□□□ 1.81
SHMT1-201ENST00000316694 GIGYF1O75420 1035 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-201ENST00000316694 HCLS1P14317 486 aaPredicted RBP26.34■■□□□ 1.81
SHMT1-201ENST00000316694 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP26.34■■□□□ 1.814e-6■■■■□ 19.9
SHMT1-201ENST00000316694 LMO7Q8WWI1 1683 aa26.34■■□□□ 1.81
SHMT1-201ENST00000316694 KCNJ4P48050 445 aa26.33■■□□□ 1.81
SHMT1-201ENST00000316694 EVI5LQ96CN4 794 aa26.33■■□□□ 1.81
SHMT1-201ENST00000316694 RBM10P98175 930 aaKnown RBP26.33■■□□□ 1.81
SHMT1-201ENST00000316694 ADGRL3Q9HAR2 1447 aa26.33■■□□□ 1.81
SHMT1-201ENST00000316694 PXDNQ92626 1479 aa26.33■■□□□ 1.8
SHMT1-201ENST00000316694 DNM1Q05193 864 aaKnown RBP26.32■■□□□ 1.8
SHMT1-201ENST00000316694 ZSWIM6Q9HCJ5 1215 aa26.32■■□□□ 1.8
SHMT1-201ENST00000316694 AMOTQ4VCS5 1084 aa26.32■■□□□ 1.8
SHMT1-201ENST00000316694 VPS37CA5D8V6 355 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-201ENST00000316694 LETM1O95202 739 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-201ENST00000316694 ZKSCAN1P17029 563 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-201ENST00000316694 UVSSAQ2YD98 709 aa26.31■■□□□ 1.8
SHMT1-201ENST00000316694 CCDC171Q6TFL3 1326 aa26.31■■□□□ 1.8
SHMT1-201ENST00000316694 UQCRHLA0A096LP55 91 aa26.31■■□□□ 1.8
SHMT1-201ENST00000316694 UQCRHP07919 91 aa26.31■■□□□ 1.8
SHMT1-201ENST00000316694 AIMP1Q12904 312 aaKnown RBP26.31■■□□□ 1.8
SHMT1-201ENST00000316694 ZSCAN31Q96LW9 406 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-201ENST00000316694 FAM227BQ96M60 508 aa26.31■■□□□ 1.8
SHMT1-201ENST00000316694 MTMR6Q9Y217 621 aa26.31■■□□□ 1.8
SHMT1-201ENST00000316694 ARHGEF25Q86VW2 580 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 NECAB1Q8N987 351 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 SH2B1Q9NRF2 756 aaPredicted RBP26.3■■□□□ 1.8
SHMT1-201ENST00000316694 RBM8AQ9Y5S9 174 aaKnown RBP26.3■■□□□ 1.8
SHMT1-201ENST00000316694 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.3■■□□□ 1.8
SHMT1-201ENST00000316694 KIAA2012Q0VF49 1180 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 NECTIN1Q15223 517 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 ME3Q16798 604 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 SUCLG2Q96I99 432 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 TM6SF1Q9BZW5 370 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 CCDC8Q9H0W5 538 aaPredicted RBP26.3■■□□□ 1.8
SHMT1-201ENST00000316694 HDAC5Q9UQL6 1122 aa26.3■■□□□ 1.8
SHMT1-201ENST00000316694 GRM8O00222 908 aa26.29■■□□□ 1.8
SHMT1-201ENST00000316694 BICC1Q9H694 974 aaKnown RBP26.29■■□□□ 1.8
SHMT1-201ENST00000316694 AXIN2Q9Y2T1 843 aa26.29■■□□□ 1.8
SHMT1-201ENST00000316694 G3BP1Q13283 466 aaKnown RBP eCLIP26.28■■□□□ 1.8
SHMT1-201ENST00000316694 NMIQ13287 307 aaPredicted RBP26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms