RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 VAMP4O75379 141 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 NUCB2P80303 420 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 PSMD1Q99460 953 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 ATG3Q9NT62 314 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 LMBRD1Q9NUN5 540 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 K7ELQ4 463 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 PPP1R12AO14974 1030 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 CDC45O75419 566 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 MCTP1Q6DN14 999 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 TXLNBQ8N3L3 684 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 TMEM87AQ8NBN3 555 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 RNF214Q8ND24 703 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 ZNF397Q8NF99 534 aaPredicted RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 CALR3Q96L12 384 aaKnown RBP7.94□□□□□ -1.14
ZNF540-201ENST00000316433 ST7Q9NRC1 585 aa7.94□□□□□ -1.14
ZNF540-201ENST00000316433 KIF1BPQ96EK5 621 aa7.93□□□□□ -1.14
ZNF540-201ENST00000316433 INTS4Q96HW7 963 aaKnown RBP7.93□□□□□ -1.14
ZNF540-201ENST00000316433 BSDC1Q9NW68 430 aaPredicted RBP7.93□□□□□ -1.14
ZNF540-201ENST00000316433 SYCE3A1L190 88 aa7.93□□□□□ -1.14
ZNF540-201ENST00000316433 ZKSCAN8Q15776 578 aaPredicted RBP7.93□□□□□ -1.14
ZNF540-201ENST00000316433 NBPF6Q5VWK0 638 aa7.93□□□□□ -1.14
ZNF540-201ENST00000316433 NBPF5PQ86XG9 351 aaPredicted RBP7.93□□□□□ -1.14
ZNF540-201ENST00000316433 FAM212AQ96EL1 285 aa7.93□□□□□ -1.14
ZNF540-201ENST00000316433 NBPF4Q96M43 638 aa7.93□□□□□ -1.14
ZNF540-201ENST00000316433 RBM27Q9P2N5 1060 aaKnown RBP7.93□□□□□ -1.14
ZNF540-201ENST00000316433 MYH15Q9Y2K3 1946 aa7.93□□□□□ -1.14
ZNF540-201ENST00000316433 ADAMTS13Q76LX8 1427 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 EXOSC9Q06265 439 aaKnown RBP7.92□□□□□ -1.14
ZNF540-201ENST00000316433 TTC31Q49AM3 519 aaPredicted RBP7.92□□□□□ -1.14
ZNF540-201ENST00000316433 ANKRD44Q8N8A2 993 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 LCMT1Q9UIC8 334 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 SLIT3O75094 1523 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 USP42Q9H9J4 1324 aaKnown RBP7.92□□□□□ -1.14
ZNF540-201ENST00000316433 CALRP27797 417 aaKnown RBP7.92□□□□□ -1.14
ZNF540-201ENST00000316433 KRBA2Q6ZNG9 492 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 FOXD4L1Q9NU39 408 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 TTC21AQ8NDW8 1320 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 SMTNL1A8MU46 457 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 ATP6V1AP38606 617 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 CUL4AQ13619 759 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 TMEM57Q8N5G2 664 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 OTUD6BQ8N6M0 293 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 KIAA1524Q8TCG1 905 aa7.92□□□□□ -1.14
ZNF540-201ENST00000316433 CWC15Q9P013 229 aaKnown RBP7.92□□□□□ -1.14
ZNF540-201ENST00000316433 ZBTB12Q9Y330 459 aaPredicted RBP7.92□□□□□ -1.14
ZNF540-201ENST00000316433 USP6P35125 1406 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 PLEKHG3A1L390 1219 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 BIRC2Q13490 618 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 KMT5BQ4FZB7 885 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 SWT1Q5T5J6 900 aaKnown RBP7.91□□□□□ -1.14
ZNF540-201ENST00000316433 SRLQ86TD4 932 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 SPEF2Q9C093 1822 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 RBM6P78332 1123 aaKnown RBP7.91□□□□□ -1.14
ZNF540-201ENST00000316433 NOM1Q5C9Z4 860 aaKnown RBP7.91□□□□□ -1.14
ZNF540-201ENST00000316433 PPP4R3CPQ6ZMV5 832 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 CCDC191Q8NCU4 936 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 NEK11Q8NG66 645 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 GPT2Q8TD30 523 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 BORCS6Q96GS4 357 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 TMEM63CQ9P1W3 806 aa7.91□□□□□ -1.14
ZNF540-201ENST00000316433 NOB1Q9ULX3 412 aaKnown RBP7.91□□□□□ -1.14
ZNF540-201ENST00000316433 NAA30Q147X3 362 aaPredicted RBP7.9□□□□□ -1.14
ZNF540-201ENST00000316433 TTC22Q5TAA0 569 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 STAP2Q9UGK3 403 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 KIF3CO14782 793 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 TRDNQ13061 729 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 PPP2R5AQ15172 486 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 TEX35Q5T0J7 233 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 PACS2Q86VP3 889 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 JMYQ8N9B5 988 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 TSPY26PQ9H489 355 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 PRDM16Q9HAZ2 1276 aa7.9□□□□□ -1.14
ZNF540-201ENST00000316433 LAMB4A4D0S4 1761 aa7.9□□□□□ -1.15
ZNF540-201ENST00000316433 CHL1O00533 1208 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 IDI1Q13907 227 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 E2F4Q16254 413 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 RPAINQ86UA6 219 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 SUGP1Q8IWZ8 645 aaKnown RBP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 RRP15Q9Y3B9 282 aaKnown RBP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 NFAT5O94916 1531 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 TMEM94Q12767 1356 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 KLHL33A6NCF5 533 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 MAP2K2P36507 400 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 C11orf91Q3C1V1 193 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 PIAS4Q8N2W9 510 aaPredicted RBP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 ITFG2Q969R8 447 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 KIF1AQ12756 1690 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 COL15A1P39059 1388 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 LTN1O94822 1766 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 U2AF1L5P0DN76 240 aaPredicted RBP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 ARID4AP29374 1257 aaPredicted RBP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 U2AF1Q01081 240 aaKnown RBP eCLIP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 BMS1Q14692 1282 aaKnown RBP7.89□□□□□ -1.15
ZNF540-201ENST00000316433 ZSCAN26Q16670 478 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 UVSSAQ2YD98 709 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 MCTP2Q6DN12 878 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 SIRT2Q8IXJ6 389 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 ANKRD20A12PQ8NF67 263 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 SNRKQ9NRH2 765 aa7.89□□□□□ -1.15
ZNF540-201ENST00000316433 LRRFIP2Q9Y608 721 aaKnown RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms