RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 CHAMP1Q96JM3 812 aa20.88■□□□□ 0.93
SCAMP4-201ENST00000316097 USP44Q9H0E7 712 aa20.88■□□□□ 0.93
SCAMP4-201ENST00000316097 CWC22Q9HCG8 908 aaKnown RBP20.88■□□□□ 0.93
SCAMP4-201ENST00000316097 UQCRHLA0A096LP55 91 aa20.88■□□□□ 0.93
SCAMP4-201ENST00000316097 UQCRHP07919 91 aa20.88■□□□□ 0.93
SCAMP4-201ENST00000316097 SMARCA5O60264 1052 aaPredicted RBP20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 ST18O60284 1047 aa20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 TTC5Q8N0Z6 440 aa20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 ZKSCAN5Q9Y2L8 839 aa20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 ABCC6O95255 1503 aa20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 OTUD7AQ8TE49 926 aaPredicted RBP20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 DCTPP1Q9H773 170 aa20.87■□□□□ 0.93
SCAMP4-201ENST00000316097 PDIA6Q15084 440 aa20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 RPAP2Q8IXW5 612 aaPredicted RBP20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 ZDHHC9Q9Y397 364 aa20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 PCDH11XQ9BZA7 1347 aa20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 PCDH11YQ9BZA8 1340 aa20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 SYCE3A1L190 88 aa20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 LRRFIP2Q9Y608 721 aaKnown RBP20.86■□□□□ 0.93
SCAMP4-201ENST00000316097 GNAI2P04899 355 aa20.85■□□□□ 0.93
SCAMP4-201ENST00000316097 DNAAF4Q8WXU2 420 aa20.85■□□□□ 0.93
SCAMP4-201ENST00000316097 TMEM63CQ9P1W3 806 aa20.85■□□□□ 0.93
SCAMP4-201ENST00000316097 MAP3K2Q9Y2U5 619 aa20.85■□□□□ 0.93
SCAMP4-201ENST00000316097 PNMA6EA0A0J9YXQ4 647 aa20.85■□□□□ 0.93
SCAMP4-201ENST00000316097 NBPF7P0C2Y1 421 aaPredicted RBP20.85■□□□□ 0.93
SCAMP4-201ENST00000316097 ADCY9O60503 1353 aa20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 FOXD4L5Q5VV16 416 aaPredicted RBP20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 LRSAM1Q6UWE0 723 aa20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 FOXD4L4Q8WXT5 416 aaPredicted RBP20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 SRCIN1Q9C0H9 1055 aa20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 PTCD1O75127 700 aaKnown RBP20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 MAP7D2Q96T17 732 aa20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 NSFL1CQ9UNZ2 370 aaKnown RBP20.84■□□□□ 0.93
SCAMP4-201ENST00000316097 SDSP20132 328 aa20.83■□□□□ 0.93
SCAMP4-201ENST00000316097 BEND3Q5T5X7 828 aa20.83■□□□□ 0.93
SCAMP4-201ENST00000316097 SIPA1L3O60292 1781 aaPredicted RBP20.83■□□□□ 0.93
SCAMP4-201ENST00000316097 SCN11AQ9UI33 1791 aa20.83■□□□□ 0.93
SCAMP4-201ENST00000316097 ADAMTS7Q9UKP4 1686 aa20.83■□□□□ 0.93
SCAMP4-201ENST00000316097 CWF19L2Q2TBE0 894 aaKnown RBP20.83■□□□□ 0.92
SCAMP4-201ENST00000316097 CASC1Q6TDU7 716 aa20.82■□□□□ 0.92
SCAMP4-201ENST00000316097 EXOC6BQ9Y2D4 811 aa20.82■□□□□ 0.92
SCAMP4-201ENST00000316097 RNF214Q8ND24 703 aa20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 GNAI3P08754 354 aa20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 UBTFL1P0CB47 393 aaPredicted RBP20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 CSPP1Q1MSJ5 1256 aa20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 DDX21Q9NR30 783 aaKnown RBP eCLIP20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 SNRPA1P09661 255 aaKnown RBP20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 FMNL2Q96PY5 1086 aa20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 ARID3AQ99856 593 aa20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 CCDC39Q9UFE4 941 aa20.81■□□□□ 0.92
SCAMP4-201ENST00000316097 PKD1L3Q7Z443 1732 aa20.8■□□□□ 0.92
SCAMP4-201ENST00000316097 MCM5P33992 734 aa20.79■□□□□ 0.92
SCAMP4-201ENST00000316097 KSR2Q6VAB6 950 aa20.79■□□□□ 0.92
SCAMP4-201ENST00000316097 COPS6Q7L5N1 327 aa20.79■□□□□ 0.92
SCAMP4-201ENST00000316097 XAGE3Q8WTP9 111 aa20.79■□□□□ 0.92
SCAMP4-201ENST00000316097 HYPKQ9NX55 129 aa20.79■□□□□ 0.92
SCAMP4-201ENST00000316097 UBAP1LF5GYI3 381 aa20.78■□□□□ 0.92
SCAMP4-201ENST00000316097 TOM1O60784 492 aa20.78■□□□□ 0.92
SCAMP4-201ENST00000316097 REC8O95072 547 aa20.78■□□□□ 0.92
SCAMP4-201ENST00000316097 NKX1-1Q15270 411 aaPredicted RBP20.77■□□□□ 0.92
SCAMP4-201ENST00000316097 CHMP4AQ9BY43 222 aa20.77■□□□□ 0.92
SCAMP4-201ENST00000316097 ATP8B2P98198 1209 aa20.77■□□□□ 0.92
SCAMP4-201ENST00000316097 ERVV-2B6SEH9 535 aa20.76■□□□□ 0.91
SCAMP4-201ENST00000316097 DYNC1I1O14576 645 aa20.76■□□□□ 0.91
SCAMP4-201ENST00000316097 RIC3Q7Z5B4 369 aa20.76■□□□□ 0.91
SCAMP4-201ENST00000316097 AHDC1Q5TGY3 1603 aaPredicted RBP20.76■□□□□ 0.91
SCAMP4-201ENST00000316097 C5P01031 1676 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 HMMRO75330 724 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 MBD3O95983 291 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 SASS6Q6UVJ0 657 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 JARID2Q92833 1246 aaPredicted RBP20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 CACNA1FO60840 1977 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 ERC2O15083 957 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 PTMAP06454 111 aaKnown RBP20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 PPP1R42Q7Z4L9 355 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 ASAP1Q9ULH1 1129 aa20.75■□□□□ 0.91
SCAMP4-201ENST00000316097 MRC1P22897 1456 aa20.74■□□□□ 0.91
SCAMP4-201ENST00000316097 A1BGP04217 495 aa20.74■□□□□ 0.91
SCAMP4-201ENST00000316097 PARP4Q9UKK3 1724 aaKnown RBP20.74■□□□□ 0.91
SCAMP4-201ENST00000316097 NEK4P51957 841 aa20.74■□□□□ 0.91
SCAMP4-201ENST00000316097 C9orf78Q9NZ63 289 aaPredicted RBP20.74■□□□□ 0.91
SCAMP4-201ENST00000316097 TSHZ3Q63HK5 1081 aa20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 LRP10Q7Z4F1 713 aa20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 SYTL4Q96C24 671 aaPredicted RBP20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 TMX3Q96JJ7 454 aa20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 PIGBQ92521 554 aa20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 TMOD3Q9NYL9 352 aa20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 PRDM4Q9UKN5 801 aa20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 COL16A1Q07092 1604 aaPredicted RBP20.73■□□□□ 0.91
SCAMP4-201ENST00000316097 NBPF26B4DH59 902 aa20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 NBPF14Q5TI25 921 aa20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 NBPF10Q6P3W6 841 aaKnown RBP20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 NBPF15Q8N660 670 aa20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 CCDC9Q9Y3X0 531 aaKnown RBP20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 IGKV5-2P06315 115 aa20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 PXDNLA1KZ92 1463 aa20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 PHLPP1O60346 1717 aa20.72■□□□□ 0.91
SCAMP4-201ENST00000316097 A0A0G2JS52 829 aa20.71■□□□□ 0.91
SCAMP4-201ENST00000316097 SRGAP3O43295 1099 aa20.71■□□□□ 0.91
SCAMP4-201ENST00000316097 MTERF4Q7Z6M4 381 aaKnown RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms