RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 USPL1Q5W0Q7 1092 aa23.19■■□□□ 1.3
HMGA1-201ENST00000311487 PI4KAP1Q8N8J0 262 aa23.19■■□□□ 1.3
HMGA1-201ENST00000311487 UBR3Q6ZT12 1888 aa23.19■■□□□ 1.3
HMGA1-201ENST00000311487 TUBGCP6Q96RT7 1819 aa23.18■■□□□ 1.3
HMGA1-201ENST00000311487 ANKRD13DQ6ZTN6 518 aa23.18■■□□□ 1.3
HMGA1-201ENST00000311487 RIC3Q7Z5B4 369 aa23.18■■□□□ 1.3
HMGA1-201ENST00000311487 CHMP4AQ9BY43 222 aa23.18■■□□□ 1.3
HMGA1-201ENST00000311487 MSL1Q68DK7 614 aa23.17■■□□□ 1.3
HMGA1-201ENST00000311487 SLC4A10Q6U841 1118 aa23.17■■□□□ 1.3
HMGA1-201ENST00000311487 KIF6Q6ZMV9 814 aa23.17■■□□□ 1.3
HMGA1-201ENST00000311487 MAP3K2Q9Y2U5 619 aa23.17■■□□□ 1.3
HMGA1-201ENST00000311487 ZPR1O75312 459 aa23.16■■□□□ 1.3
HMGA1-201ENST00000311487 SSFA2P28290 1259 aa23.16■■□□□ 1.3
HMGA1-201ENST00000311487 BICDL1Q6ZP65 573 aa23.16■■□□□ 1.3
HMGA1-201ENST00000311487 CAMTA2O94983 1202 aa23.14■■□□□ 1.3
HMGA1-201ENST00000311487 ADCY9O60503 1353 aa23.14■■□□□ 1.3
HMGA1-201ENST00000311487 MAP3K15Q6ZN16 1313 aa23.14■■□□□ 1.29
HMGA1-201ENST00000311487 ATP5J2-PTCD1G3V325 749 aa23.14■■□□□ 1.29
HMGA1-201ENST00000311487 C20orf194Q5TEA3 1177 aa23.14■■□□□ 1.29
HMGA1-201ENST00000311487 BCL2L12Q9HB09 334 aa23.14■■□□□ 1.29
HMGA1-201ENST00000311487 TRIM27P14373 513 aa23.13■■□□□ 1.29
HMGA1-201ENST00000311487 GPTP24298 496 aa23.13■■□□□ 1.29
HMGA1-201ENST00000311487 FKBP8Q14318 412 aa23.13■■□□□ 1.29
HMGA1-201ENST00000311487 NARFQ9UHQ1 456 aa23.13■■□□□ 1.29
HMGA1-201ENST00000311487 A0A087WZG4 1122 aa23.12■■□□□ 1.29
HMGA1-201ENST00000311487 FAM177BA6PVY3 158 aa23.12■■□□□ 1.29
HMGA1-201ENST00000311487 KSR2Q6VAB6 950 aa23.12■■□□□ 1.29
HMGA1-201ENST00000311487 PLBD2Q8NHP8 589 aa23.12■■□□□ 1.29
HMGA1-201ENST00000311487 KIF16BQ96L93 1317 aa23.12■■□□□ 1.29
HMGA1-201ENST00000311487 USP42Q9H9J4 1324 aaKnown RBP23.12■■□□□ 1.29
HMGA1-201ENST00000311487 DDX58O95786 925 aaKnown RBP23.12■■□□□ 1.29
HMGA1-201ENST00000311487 IRX6P78412 446 aaPredicted RBP23.12■■□□□ 1.29
HMGA1-201ENST00000311487 MYD88Q99836 296 aa23.12■■□□□ 1.29
HMGA1-201ENST00000311487 C4AP0C0L4 1744 aa23.11■■□□□ 1.29
HMGA1-201ENST00000311487 ZKSCAN2Q63HK3 967 aa23.11■■□□□ 1.29
HMGA1-201ENST00000311487 PANK1Q8TE04 598 aa23.11■■□□□ 1.29
HMGA1-201ENST00000311487 ZBTB7AO95365 584 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 RLBP1P12271 317 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 GYS1P13807 737 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 ADRA2BP18089 450 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 ATF7IPQ6VMQ6 1270 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 BRPF1P55201 1214 aaPredicted RBP23.1■■□□□ 1.29
HMGA1-201ENST00000311487 CWF19L2Q2TBE0 894 aaKnown RBP23.1■■□□□ 1.29
HMGA1-201ENST00000311487 TBC1D9BQ66K14 1250 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 DNAAF4Q8WXU2 420 aa23.1■■□□□ 1.29
HMGA1-201ENST00000311487 PTPRCP08575 1304 aa23.09■■□□□ 1.29
HMGA1-201ENST00000311487 NEFLP07196 543 aa23.09■■□□□ 1.29
HMGA1-201ENST00000311487 HMGB2P26583 209 aaKnown RBP23.09■■□□□ 1.29
HMGA1-201ENST00000311487 JARID2Q92833 1246 aaPredicted RBP23.09■■□□□ 1.29
HMGA1-201ENST00000311487 RRP1P56182 461 aaKnown RBP23.08■■□□□ 1.29
HMGA1-201ENST00000311487 RTL5Q5HYW3 569 aaPredicted RBP23.08■■□□□ 1.29
HMGA1-201ENST00000311487 CACNA1FO60840 1977 aa23.08■■□□□ 1.29
HMGA1-201ENST00000311487 IPO8O15397 1037 aaKnown RBP23.08■■□□□ 1.28
HMGA1-201ENST00000311487 GIGYF2Q6Y7W6 1299 aaKnown RBP23.08■■□□□ 1.28
HMGA1-201ENST00000311487 FLAD1Q8NFF5 587 aa23.07■■□□□ 1.28
HMGA1-201ENST00000311487 ATF5Q9Y2D1 282 aaPredicted RBP23.07■■□□□ 1.28
HMGA1-201ENST00000311487 FTSJ3Q8IY81 847 aaKnown RBP23.06■■□□□ 1.28
HMGA1-201ENST00000311487 METTL22Q9BUU2 404 aaPredicted RBP23.06■■□□□ 1.28
HMGA1-201ENST00000311487 NIP7Q9Y221 180 aaKnown RBP eCLIP23.06■■□□□ 1.28
HMGA1-201ENST00000311487 ERVV-1B6SEH8 477 aa23.06■■□□□ 1.28
HMGA1-201ENST00000311487 CCDC24Q8N4L8 307 aa23.06■■□□□ 1.28
HMGA1-201ENST00000311487 IGKV5-2P06315 115 aa23.05■■□□□ 1.28
HMGA1-201ENST00000311487 API5Q9BZZ5 524 aaKnown RBP23.05■■□□□ 1.28
HMGA1-201ENST00000311487 ARFGEF2Q9Y6D5 1785 aa23.05■■□□□ 1.28
HMGA1-201ENST00000311487 TCIRG1Q13488 830 aa23.04■■□□□ 1.28
HMGA1-201ENST00000311487 DZIP1LQ8IYY4 767 aaKnown RBP23.04■■□□□ 1.28
HMGA1-201ENST00000311487 TMEM57Q8N5G2 664 aa23.04■■□□□ 1.28
HMGA1-201ENST00000311487 UBN2Q6ZU65 1347 aa23.04■■□□□ 1.28
HMGA1-201ENST00000311487 NFIXQ14938 502 aa23.04■■□□□ 1.28
HMGA1-201ENST00000311487 ARHGAP45Q92619 1136 aa23.04■■□□□ 1.28
HMGA1-201ENST00000311487 NUP98P52948 1817 aa23.03■■□□□ 1.28
HMGA1-201ENST00000311487 BEND3Q5T5X7 828 aa23.03■■□□□ 1.28
HMGA1-201ENST00000311487 SYNE4Q8N205 404 aa23.03■■□□□ 1.28
HMGA1-201ENST00000311487 ZNF652Q9Y2D9 606 aa23.03■■□□□ 1.28
HMGA1-201ENST00000311487 COG6Q9Y2V7 657 aa23.03■■□□□ 1.28
HMGA1-201ENST00000311487 GOLGB1Q14789 3259 aaKnown RBP23.03■■□□□ 1.28
HMGA1-201ENST00000311487 NEXNQ0ZGT2 675 aa23.02■■□□□ 1.28
HMGA1-201ENST00000311487 ITPRIPQ8IWB1 547 aa23.02■■□□□ 1.28
HMGA1-201ENST00000311487 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.02■■□□□ 1.28
HMGA1-201ENST00000311487 SETDB2Q96T68 719 aa23.01■■□□□ 1.27
HMGA1-201ENST00000311487 BCORQ6W2J9 1755 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 NEURL1BA8MQ27 555 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 MMP10P09238 476 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 SUSD4Q5VX71 490 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 CLEC4GQ6UXB4 293 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 ZNF34Q8IZ26 560 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 ABCC4O15439 1325 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 SCN7AQ01118 1682 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 DDR1Q08345 913 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 NUTM1Q86Y26 1132 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 SRCIN1Q9C0H9 1055 aa23■■□□□ 1.27
HMGA1-201ENST00000311487 NLRP10Q86W26 655 aa22.99■■□□□ 1.27
HMGA1-201ENST00000311487 NLGN1Q8N2Q7 840 aa22.98■■□□□ 1.27
HMGA1-201ENST00000311487 FAM89AQ96GI7 184 aa22.98■■□□□ 1.27
HMGA1-201ENST00000311487 ISCA1Q9BUE6 129 aa22.98■■□□□ 1.27
HMGA1-201ENST00000311487 LINS1Q8NG48 757 aa22.98■■□□□ 1.27
HMGA1-201ENST00000311487 TM4SF1P30408 202 aa22.97■■□□□ 1.27
HMGA1-201ENST00000311487 HSP90AB3PQ58FF7 597 aa22.97■■□□□ 1.27
HMGA1-201ENST00000311487 QSER1Q2KHR3 1735 aa22.97■■□□□ 1.27
HMGA1-201ENST00000311487 NPHP1O15259 732 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms