RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 WDR43Q15061 677 aaKnown RBP eCLIP25.69■■□□□ 1.7
LIME1-201ENST00000309546 NBPF5PQ86XG9 351 aaPredicted RBP25.69■■□□□ 1.7
LIME1-201ENST00000309546 TSPYL4Q9UJ04 414 aa25.69■■□□□ 1.7
LIME1-201ENST00000309546 RRP7AQ9Y3A4 280 aaKnown RBP25.69■■□□□ 1.7
LIME1-201ENST00000309546 TMPOP42166 694 aaKnown RBP25.68■■□□□ 1.7
LIME1-201ENST00000309546 PDZRN3Q9UPQ7 1066 aa25.68■■□□□ 1.7
LIME1-201ENST00000309546 CCDC88AQ3V6T2 1871 aa25.68■■□□□ 1.7
LIME1-201ENST00000309546 LMOD3Q0VAK6 560 aa25.67■■□□□ 1.7
LIME1-201ENST00000309546 ZNF219Q9P2Y4 722 aaPredicted RBP25.67■■□□□ 1.7
LIME1-201ENST00000309546 NIP7Q9Y221 180 aaKnown RBP eCLIP25.67■■□□□ 1.7
LIME1-201ENST00000309546 MYL6BP14649 208 aa25.66■■□□□ 1.7
LIME1-201ENST00000309546 NEUROD2Q15784 382 aa25.66■■□□□ 1.7
LIME1-201ENST00000309546 NMRK2Q9NPI5 230 aa25.66■■□□□ 1.7
LIME1-201ENST00000309546 FAM177BA6PVY3 158 aa25.65■■□□□ 1.7
LIME1-201ENST00000309546 HLFQ16534 295 aa25.65■■□□□ 1.7
LIME1-201ENST00000309546 TIAM2Q8IVF5 1701 aa25.65■■□□□ 1.7
LIME1-201ENST00000309546 NUP98P52948 1817 aa25.65■■□□□ 1.7
LIME1-201ENST00000309546 ARFGEF2Q9Y6D5 1785 aa25.64■■□□□ 1.69
LIME1-201ENST00000309546 KIF6Q6ZMV9 814 aa25.63■■□□□ 1.69
LIME1-201ENST00000309546 SLX4Q8IY92 1834 aa25.63■■□□□ 1.69
LIME1-201ENST00000309546 RGL2O15211 777 aa25.62■■□□□ 1.69
LIME1-201ENST00000309546 C21orf2O43822 256 aa25.62■■□□□ 1.69
LIME1-201ENST00000309546 RUNDC1Q96C34 613 aa25.62■■□□□ 1.69
LIME1-201ENST00000309546 PRKRIP1Q9H875 184 aaPredicted RBP25.62■■□□□ 1.69
LIME1-201ENST00000309546 NFKBIEO00221 500 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 SRGNP10124 158 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 LMNB1P20700 586 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 STYK1Q6J9G0 422 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 TPTE2Q6XPS3 522 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 TTLL7Q6ZT98 887 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 CNKSR1Q969H4 720 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 FER1L6Q2WGJ9 1857 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 TNRC6CQ9HCJ0 1690 aaKnown RBP25.61■■□□□ 1.69
LIME1-201ENST00000309546 MAP3K15Q6ZN16 1313 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 KDM2BQ8NHM5 1336 aa25.61■■□□□ 1.69
LIME1-201ENST00000309546 MASTLQ96GX5 879 aa25.6■■□□□ 1.69
LIME1-201ENST00000309546 EIF2S2P20042 333 aaKnown RBP25.59■■□□□ 1.69
LIME1-201ENST00000309546 GTF2E1P29083 439 aaPredicted RBP25.59■■□□□ 1.69
LIME1-201ENST00000309546 PRELPP51888 382 aa25.59■■□□□ 1.69
LIME1-201ENST00000309546 ZBTB3Q9H5J0 574 aa25.59■■□□□ 1.69
LIME1-201ENST00000309546 ADAMTS8Q9UP79 889 aa25.59■■□□□ 1.69
LIME1-201ENST00000309546 ERVV-1B6SEH8 477 aa25.58■■□□□ 1.69
LIME1-201ENST00000309546 PRPF40BQ6NWY9 871 aaKnown RBP25.58■■□□□ 1.69
LIME1-201ENST00000309546 BABAM1Q9NWV8 329 aa25.58■■□□□ 1.69
LIME1-201ENST00000309546 LAS1LQ9Y4W2 734 aaKnown RBP25.58■■□□□ 1.69
LIME1-201ENST00000309546 ERBB4Q15303 1308 aa25.58■■□□□ 1.69
LIME1-201ENST00000309546 HSPA6P17066 643 aa25.57■■□□□ 1.68
LIME1-201ENST00000309546 C16orf71Q8IYS4 520 aaPredicted RBP25.57■■□□□ 1.68
LIME1-201ENST00000309546 TOMM70O94826 608 aa25.56■■□□□ 1.68
LIME1-201ENST00000309546 ZC3H4Q9UPT8 1303 aaKnown RBP25.56■■□□□ 1.68
LIME1-201ENST00000309546 DICER1Q9UPY3 1922 aaKnown RBP25.55■■□□□ 1.68
LIME1-201ENST00000309546 GPTP24298 496 aa25.55■■□□□ 1.68
LIME1-201ENST00000309546 TRIM35Q9UPQ4 493 aa25.55■■□□□ 1.68
LIME1-201ENST00000309546 NPR1P16066 1061 aa25.54■■□□□ 1.68
LIME1-201ENST00000309546 NUTM1Q86Y26 1132 aa25.54■■□□□ 1.68
LIME1-201ENST00000309546 NECTIN2Q92692 538 aa25.54■■□□□ 1.68
LIME1-201ENST00000309546 NYXQ9GZU5 481 aa25.54■■□□□ 1.68
LIME1-201ENST00000309546 RRAGCQ9HB90 399 aa25.54■■□□□ 1.68
LIME1-201ENST00000309546 ABCC12Q96J65 1359 aa25.54■■□□□ 1.68
LIME1-201ENST00000309546 ANXA1P04083 346 aa25.53■■□□□ 1.68
LIME1-201ENST00000309546 TAOK3Q9H2K8 898 aa25.53■■□□□ 1.68
LIME1-201ENST00000309546 PROSER3Q2NL68 480 aa25.52■■□□□ 1.68
LIME1-201ENST00000309546 SOGA3Q5TF21 947 aa25.52■■□□□ 1.68
LIME1-201ENST00000309546 UBN2Q6ZU65 1347 aa25.52■■□□□ 1.68
LIME1-201ENST00000309546 PDIA6Q15084 440 aa25.51■■□□□ 1.67
LIME1-201ENST00000309546 KRT24Q2M2I5 525 aa25.51■■□□□ 1.67
LIME1-201ENST00000309546 KLRG2A4D1S0 409 aaPredicted RBP25.5■■□□□ 1.67
LIME1-201ENST00000309546 CHL1O00533 1208 aa25.5■■□□□ 1.67
LIME1-201ENST00000309546 ERFEQ4G0M1 354 aa25.5■■□□□ 1.67
LIME1-201ENST00000309546 GIGYF2Q6Y7W6 1299 aaKnown RBP25.5■■□□□ 1.67
LIME1-201ENST00000309546 LTBP3Q9NS15 1303 aa25.5■■□□□ 1.67
LIME1-201ENST00000309546 GLTPD2A6NH11 291 aa25.49■■□□□ 1.67
LIME1-201ENST00000309546 LRP10Q7Z4F1 713 aa25.49■■□□□ 1.67
LIME1-201ENST00000309546 ANKRD36CQ5JPF3 1778 aa25.49■■□□□ 1.67
LIME1-201ENST00000309546 IBTKQ9P2D0 1353 aaPredicted RBP25.48■■□□□ 1.67
LIME1-201ENST00000309546 ZEB1P37275 1124 aaPredicted RBP25.48■■□□□ 1.67
LIME1-201ENST00000309546 CCDC93Q567U6 631 aa25.48■■□□□ 1.67
LIME1-201ENST00000309546 SUSD4Q5VX71 490 aa25.48■■□□□ 1.67
LIME1-201ENST00000309546 RBM46Q8TBY0 533 aaKnown RBP25.48■■□□□ 1.67
LIME1-201ENST00000309546 AIMP1Q12904 312 aaKnown RBP25.47■■□□□ 1.67
LIME1-201ENST00000309546 ZNF34Q8IZ26 560 aa25.47■■□□□ 1.67
LIME1-201ENST00000309546 OLFM4Q6UX06 510 aa25.45■■□□□ 1.66
LIME1-201ENST00000309546 XAGE3Q8WTP9 111 aa25.45■■□□□ 1.66
LIME1-201ENST00000309546 C7orf43Q8WVR3 580 aa25.45■■□□□ 1.66
LIME1-201ENST00000309546 APAF1O14727 1248 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 NTSR2O95665 410 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 ALDH1B1P30837 517 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 PARP10Q53GL7 1025 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 DPY19L2Q6NUT2 758 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 COPS6Q7L5N1 327 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 PPP1R42Q7Z4L9 355 aa25.44■■□□□ 1.66
LIME1-201ENST00000309546 RPGRQ92834 1020 aaKnown RBP25.44■■□□□ 1.66
LIME1-201ENST00000309546 CRY2Q49AN0 593 aa25.43■■□□□ 1.66
LIME1-201ENST00000309546 HDGFL1Q5TGJ6 251 aa25.43■■□□□ 1.66
LIME1-201ENST00000309546 RIC1Q4ADV7 1423 aa25.43■■□□□ 1.66
LIME1-201ENST00000309546 CEP350Q5VT06 3117 aa25.43■■□□□ 1.66
LIME1-201ENST00000309546 WDR90Q96KV7 1748 aa25.43■■□□□ 1.66
LIME1-201ENST00000309546 VEGFAP15692 232 aaPredicted RBP25.42■■□□□ 1.66
LIME1-201ENST00000309546 APLP1P51693 650 aa25.42■■□□□ 1.66
LIME1-201ENST00000309546 CFAP44Q96MT7 982 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms