RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 BAG4O95429 457 aaKnown RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 VIMP08670 466 aaKnown RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 FAM186AA6NE01 2351 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC152Q4G0S7 254 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 GFAPP14136 432 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 NMIQ13287 307 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 NEDD9Q14511 834 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 FKBP15Q5T1M5 1219 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 RRP36Q96EU6 259 aaKnown RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 MMRN2Q9H8L6 949 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 RAI14Q9P0K7 980 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 INPP5BP32019 993 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 ATL3Q6DD88 541 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 P3H4Q92791 437 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 RAB34Q9BZG1 259 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 VEZTQ9HBM0 779 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 DOCK9Q9BZ29 2069 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 ANKRD62A6NC57 917 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 KIF4BQ2VIQ3 1234 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 WWC2Q6AWC2 1192 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 TSG101Q99816 390 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 ZFXP17010 805 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 PDE6BP35913 854 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 CLNS1AP54105 237 aaKnown RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 TEX2Q8IWB9 1127 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 NACAE9PAV3 2078 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 ATP8B1O43520 1251 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 TOP1P11387 765 aaKnown RBP5.55□□□□□ -1.52
CSMD3-201ENST00000297405 DAAM1Q9Y4D1 1078 aa5.55□□□□□ -1.52
CSMD3-201ENST00000297405 LOXHD1Q8IVV2 1947 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GOLGA8QA0A0J9YX86 632 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GOLGA8OA6NCC3 632 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GOLGA8NF8WBI6 632 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 USP47Q96K76 1375 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 PCK1P35558 622 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 STK38Q15208 465 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC14Q49A88 953 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 LRRC23Q53EV4 343 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 RUFY4Q6ZNE9 571 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 A0A1B0GW55 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 YEATS4O95619 227 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4L2P0CJ85 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4L3P0CJ86 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4L4P0CJ87 422 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4L5P0CJ88 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4L6P0CJ89 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4L7P0CJ90 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SPAG1Q07617 926 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 HVCN1Q96D96 273 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 PPP1R9BQ96SB3 815 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DUX4Q9UBX2 424 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SLC4A8Q2Y0W8 1093 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 PCM1Q15154 2024 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 IRX1P78414 480 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 CFAP100Q494V2 611 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 ZFYVE27Q5T4F4 411 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 PHLDB3Q6NSJ2 640 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 NUCB1Q02818 461 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 RNF10Q8N5U6 811 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 TBC1D31Q96DN5 1066 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SEC63Q9UGP8 760 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 CCDC88BA6NC98 1476 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SOGA3Q5TF21 947 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 BCL2L13Q9BXK5 485 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 NUF2Q9BZD4 464 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 ANO2Q9NQ90 1003 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 ERICH3Q5RHP9 1530 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GSTTP1A0A1W2PQM5 241 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 DIAPH1O60610 1272 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SSBP05455 408 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GNAI3P08754 354 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 IFIT2P09913 472 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 BLVRAP53004 296 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 MICALL1Q8N3F8 863 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 ZNF280CQ8ND82 737 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 MIS12Q9H081 205 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 IQCGQ9H095 443 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 PLCB1Q9NQ66 1216 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 CYP46A1Q9Y6A2 500 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 SNRNP200O75643 2136 aaKnown RBP5.54□□□□□ -1.52
CSMD3-201ENST00000297405 GOLGA5Q8TBA6 731 aa5.54□□□□□ -1.52
CSMD3-201ENST00000297405 BMP15O95972 392 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 GCKP35557 465 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 ME1P48163 572 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 CAMK4Q16566 473 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 NRBF2Q96F24 287 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 ERO1AQ96HE7 468 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 JAKMIP1Q96N16 626 aaKnown RBP5.53□□□□□ -1.52
CSMD3-201ENST00000297405 PAIP2BQ9ULR5 123 aaKnown RBP5.53□□□□□ -1.52
CSMD3-201ENST00000297405 EIF2AK4Q9P2K8 1649 aaKnown RBP5.53□□□□□ -1.52
CSMD3-201ENST00000297405 LCA5Q86VQ0 697 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 GABPB2Q8TAK5 448 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-201ENST00000297405 NOL7Q9UMY1 257 aaKnown RBP5.53□□□□□ -1.52
CSMD3-201ENST00000297405 KIF1BO60333 1816 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 HOXC8P31273 242 aa5.53□□□□□ -1.52
CSMD3-201ENST00000297405 DDX27Q96GQ7 796 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms