RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 RHPN1Q8TCX5 695 aa18.83■□□□□ 0.61
SF3B4-201ENST00000271628 STAP2Q9UGK3 403 aa18.83■□□□□ 0.61
SF3B4-201ENST00000271628 LRP6O75581 1613 aa18.82■□□□□ 0.6
SF3B4-201ENST00000271628 PIGBQ92521 554 aa18.82■□□□□ 0.6
SF3B4-201ENST00000271628 AOX1Q06278 1338 aa18.82■□□□□ 0.6
SF3B4-201ENST00000271628 WNK3Q9BYP7 1800 aa18.82■□□□□ 0.6
SF3B4-201ENST00000271628 NBPF26B4DH59 902 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 PIP4K2AP48426 406 aaPredicted RBP18.81■□□□□ 0.6
SF3B4-201ENST00000271628 NBPF14Q5TI25 921 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 NBPF10Q6P3W6 841 aaKnown RBP18.81■□□□□ 0.6
SF3B4-201ENST00000271628 NBPF15Q8N660 670 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 SUCLG2Q96I99 432 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 ARFGEF2Q9Y6D5 1785 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 ERC1Q8IUD2 1116 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 SPATA31A1Q5TZJ5 1347 aa18.81■□□□□ 0.6
SF3B4-201ENST00000271628 ITGB4P16144 1822 aa18.8■□□□□ 0.6
SF3B4-201ENST00000271628 NRAPQ86VF7 1730 aa18.8■□□□□ 0.6
SF3B4-201ENST00000271628 BICC1Q9H694 974 aaKnown RBP18.8■□□□□ 0.6
SF3B4-201ENST00000271628 COL15A1P39059 1388 aa18.79■□□□□ 0.6
SF3B4-201ENST00000271628 A1BGP04217 495 aa18.79■□□□□ 0.6
SF3B4-201ENST00000271628 KAZALD1Q96I82 304 aa18.79■□□□□ 0.6
SF3B4-201ENST00000271628 ATG3Q9NT62 314 aa18.79■□□□□ 0.6
SF3B4-201ENST00000271628 NWD2Q9ULI1 1742 aa18.78■□□□□ 0.6
SF3B4-201ENST00000271628 OS9Q13438 667 aaPredicted RBP18.78■□□□□ 0.6
SF3B4-201ENST00000271628 IL1RAPL2Q9NP60 686 aa18.78■□□□□ 0.6
SF3B4-201ENST00000271628 ASAP1Q9ULH1 1129 aa18.78■□□□□ 0.6
SF3B4-201ENST00000271628 AFDNP55196 1824 aaKnown RBP18.78■□□□□ 0.6
SF3B4-201ENST00000271628 BCL9O00512 1426 aa18.78■□□□□ 0.6
SF3B4-201ENST00000271628 NUTM2BA6NNL0 878 aaPredicted RBP18.78■□□□□ 0.6
SF3B4-201ENST00000271628 NUTM2EB1AL46 878 aaPredicted RBP18.78■□□□□ 0.6
SF3B4-201ENST00000271628 STARD3NLO95772 234 aa18.78■□□□□ 0.6
SF3B4-201ENST00000271628 NUTM2AQ8IVF1 878 aaPredicted RBP18.78■□□□□ 0.6
SF3B4-201ENST00000271628 DDB1Q16531 1140 aa18.77■□□□□ 0.6
SF3B4-201ENST00000271628 CLASRPQ8N2M8 674 aaKnown RBP18.77■□□□□ 0.6
SF3B4-201ENST00000271628 UBAP1LF5GYI3 381 aa18.77■□□□□ 0.59
SF3B4-201ENST00000271628 SLIT2O94813 1529 aa18.76■□□□□ 0.59
SF3B4-201ENST00000271628 SPATA31A5Q5VU36 1347 aa18.76■□□□□ 0.59
SF3B4-201ENST00000271628 SPATA31A7Q8IWB4 1347 aa18.76■□□□□ 0.59
SF3B4-201ENST00000271628 A0A087WZG4 1122 aa18.75■□□□□ 0.59
SF3B4-201ENST00000271628 FRAT2O75474 233 aaPredicted RBP18.75■□□□□ 0.59
SF3B4-201ENST00000271628 G3BP1Q13283 466 aaKnown RBP eCLIP18.75■□□□□ 0.59
SF3B4-201ENST00000271628 ATP5J2-PTCD1G3V325 749 aa18.75■□□□□ 0.59
SF3B4-201ENST00000271628 BARGINQ6ZT62 677 aa18.75■□□□□ 0.59
SF3B4-201ENST00000271628 TTLL7Q6ZT98 887 aa18.75■□□□□ 0.59
SF3B4-201ENST00000271628 RBM42Q9BTD8 480 aaKnown RBP18.75■□□□□ 0.59
SF3B4-201ENST00000271628 TUBGCP6Q96RT7 1819 aa18.74■□□□□ 0.59
SF3B4-201ENST00000271628 REC8O95072 547 aa18.74■□□□□ 0.59
SF3B4-201ENST00000271628 TBC1D2Q9BYX2 928 aa18.74■□□□□ 0.59
SF3B4-201ENST00000271628 NUP188Q5SRE5 1749 aa18.74■□□□□ 0.59
SF3B4-201ENST00000271628 TTC41PQ6P2S7 1318 aa18.74■□□□□ 0.59
SF3B4-201ENST00000271628 TRIM6-TRIM34B2RNG4 842 aa18.73■□□□□ 0.59
SF3B4-201ENST00000271628 NUTM1Q86Y26 1132 aa18.73■□□□□ 0.59
SF3B4-201ENST00000271628 DNAJC10Q8IXB1 793 aa18.73■□□□□ 0.59
SF3B4-201ENST00000271628 CCDC191Q8NCU4 936 aa18.73■□□□□ 0.59
SF3B4-201ENST00000271628 CWC25Q9NXE8 425 aaPredicted RBP18.73■□□□□ 0.59
SF3B4-201ENST00000271628 RABL6Q3YEC7 729 aaPredicted RBP18.73■□□□□ 0.59
SF3B4-201ENST00000271628 UBE3BQ7Z3V4 1068 aa18.73■□□□□ 0.59
SF3B4-201ENST00000271628 SYTL4Q96C24 671 aaPredicted RBP18.73■□□□□ 0.59
SF3B4-201ENST00000271628 USP42Q9H9J4 1324 aaKnown RBP18.73■□□□□ 0.59
SF3B4-201ENST00000271628 H7C1W4 665 aa18.72■□□□□ 0.59
SF3B4-201ENST00000271628 TSHZ3Q63HK5 1081 aa18.72■□□□□ 0.59
SF3B4-201ENST00000271628 PA2G4Q9UQ80 394 aaKnown RBP18.72■□□□□ 0.59
SF3B4-201ENST00000271628 ERC2O15083 957 aa18.72■□□□□ 0.59
SF3B4-201ENST00000271628 RILPL2Q969X0 211 aa18.72■□□□□ 0.59
SF3B4-201ENST00000271628 GPATCH3Q96I76 525 aa18.72■□□□□ 0.59
SF3B4-201ENST00000271628 USP26Q9BXU7 913 aa18.72■□□□□ 0.59
SF3B4-201ENST00000271628 JCADQ9P266 1359 aa18.71■□□□□ 0.59
SF3B4-201ENST00000271628 PRIM1P49642 420 aaKnown RBP18.71■□□□□ 0.59
SF3B4-201ENST00000271628 CASP7P55210 303 aa18.71■□□□□ 0.59
SF3B4-201ENST00000271628 ZBTB3Q9H5J0 574 aa18.71■□□□□ 0.59
SF3B4-201ENST00000271628 COPRSQ9NQ92 184 aa18.71■□□□□ 0.59
SF3B4-201ENST00000271628 CCDC9Q9Y3X0 531 aaKnown RBP18.71■□□□□ 0.59
SF3B4-201ENST00000271628 KAT6BQ8WYB5 2073 aa18.71■□□□□ 0.59
SF3B4-201ENST00000271628 EPHA10Q5JZY3 1008 aa18.7■□□□□ 0.58
SF3B4-201ENST00000271628 KIF6Q6ZMV9 814 aa18.7■□□□□ 0.58
SF3B4-201ENST00000271628 UNC5CLQ8IV45 518 aa18.7■□□□□ 0.58
SF3B4-201ENST00000271628 PI4K2BQ8TCG2 481 aa18.7■□□□□ 0.58
SF3B4-201ENST00000271628 SNX21Q969T3 373 aa18.7■□□□□ 0.58
SF3B4-201ENST00000271628 GLRX3O76003 335 aaKnown RBP18.7■□□□□ 0.58
SF3B4-201ENST00000271628 IFIT2P09913 472 aaKnown RBP18.7■□□□□ 0.58
SF3B4-201ENST00000271628 HSCBQ8IWL3 235 aa18.7■□□□□ 0.58
SF3B4-201ENST00000271628 DOT1LQ8TEK3 1739 aa18.69■□□□□ 0.58
SF3B4-201ENST00000271628 TCIRG1Q13488 830 aa18.69■□□□□ 0.58
SF3B4-201ENST00000271628 SASH1O94885 1247 aa18.69■□□□□ 0.58
SF3B4-201ENST00000271628 TRIM28Q13263 835 aaKnown RBP18.69■□□□□ 0.58
SF3B4-201ENST00000271628 CNTROBQ8N137 903 aa18.69■□□□□ 0.58
SF3B4-201ENST00000271628 KIF2CQ99661 725 aa18.69■□□□□ 0.58
SF3B4-201ENST00000271628 ANTXR1Q9H6X2 564 aa18.69■□□□□ 0.58
SF3B4-201ENST00000271628 CYP19A1P11511 503 aaPredicted RBP18.68■□□□□ 0.58
SF3B4-201ENST00000271628 ECHDC1Q9NTX5 307 aa18.68■□□□□ 0.58
SF3B4-201ENST00000271628 CHMLP26374 656 aa18.67■□□□□ 0.58
SF3B4-201ENST00000271628 ISCA1Q9BUE6 129 aa18.67■□□□□ 0.58
SF3B4-201ENST00000271628 MARCH10Q8NA82 808 aaPredicted RBP18.67■□□□□ 0.58
SF3B4-201ENST00000271628 NGLY1Q96IV0 654 aa18.67■□□□□ 0.58
SF3B4-201ENST00000271628 ZNF330Q9Y3S2 320 aaPredicted RBP18.67■□□□□ 0.58
SF3B4-201ENST00000271628 RFX5P48382 616 aaPredicted RBP18.66■□□□□ 0.58
SF3B4-201ENST00000271628 PTPN12Q05209 780 aaKnown RBP18.66■□□□□ 0.58
SF3B4-201ENST00000271628 AACSQ86V21 672 aa18.66■□□□□ 0.58
SF3B4-201ENST00000271628 JARID2Q92833 1246 aaPredicted RBP18.66■□□□□ 0.58
SF3B4-201ENST00000271628 SLC4A9Q96Q91 983 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms