RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 BIN1O00499 593 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 FAM193AP78312 1265 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 ERCC4Q92889 916 aaPredicted RBP13.53□□□□□ -0.24
VPS33A-201ENST00000267199 TSPYL1Q9H0U9 437 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 CNNM1Q9NRU3 951 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 CCDC57Q2TAC2 916 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 TOM1L2Q6ZVM7 507 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 G2E3Q7L622 706 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 ZBTB9Q96C00 473 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 CEP135Q66GS9 1140 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 CALCOCO1Q9P1Z2 691 aa13.53□□□□□ -0.24
VPS33A-201ENST00000267199 ZSCAN22P10073 491 aaPredicted RBP13.52□□□□□ -0.24
VPS33A-201ENST00000267199 ERVK-7P63135 1459 aa13.52□□□□□ -0.24
VPS33A-201ENST00000267199 PDIA4P13667 645 aaKnown RBP13.52□□□□□ -0.24
VPS33A-201ENST00000267199 DNM1Q05193 864 aaKnown RBP13.52□□□□□ -0.24
VPS33A-201ENST00000267199 CHPF2Q9P2E5 772 aa13.52□□□□□ -0.24
VPS33A-201ENST00000267199 UHRF1BP1LA0JNW5 1464 aa13.52□□□□□ -0.24
VPS33A-201ENST00000267199 SBNO2Q9Y2G9 1366 aa13.52□□□□□ -0.25
VPS33A-201ENST00000267199 EVI5LQ96CN4 794 aa13.52□□□□□ -0.25
VPS33A-201ENST00000267199 PTGS1P23219 599 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 FILIP1LQ4L180 1135 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 PPFIBP1Q86W92 1011 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 ANO10Q9NW15 660 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 PTCD1O75127 700 aaKnown RBP13.51□□□□□ -0.25
VPS33A-201ENST00000267199 ANAPC15P60006 121 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 KIF6Q6ZMV9 814 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 DHX37Q8IY37 1157 aaKnown RBP13.51□□□□□ -0.25
VPS33A-201ENST00000267199 POGZQ7Z3K3 1410 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 CHAMP1Q96JM3 812 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 EYA1Q99502 592 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 HYPKQ9NX55 129 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 KDM5DQ9BY66 1539 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 KDM5AP29375 1690 aaKnown RBP13.51□□□□□ -0.25
VPS33A-201ENST00000267199 ANO6Q4KMQ2 910 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 ISM2Q6H9L7 571 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 JMYQ8N9B5 988 aa13.51□□□□□ -0.25
VPS33A-201ENST00000267199 KIF2AO00139 706 aaPredicted RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 MSH6P52701 1360 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 SART3Q15020 963 aaKnown RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 NCBP3Q53F19 620 aaKnown RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 VPS53Q5VIR6 699 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 KRT222Q8N1A0 295 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 PRDM11Q9NQV5 511 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 DDX19AQ9NUU7 478 aaKnown RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 TNRQ92752 1358 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 ERLIN1O75477 346 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 TMC6Q7Z403 805 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 NOL10Q9BSC4 688 aaKnown RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 ZSWIM4Q9H7M6 989 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 DACT1Q9NYF0 836 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 TTC21AQ8NDW8 1320 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 EIF3JO75822 258 aaKnown RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 JARID2Q92833 1246 aaPredicted RBP13.5□□□□□ -0.25
VPS33A-201ENST00000267199 MTMR7Q9Y216 660 aa13.5□□□□□ -0.25
VPS33A-201ENST00000267199 MAP3K19Q56UN5 1328 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 SMARCE1Q969G3 411 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 FAM200AQ8TCP9 573 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS33A-201ENST00000267199 A0A087WZG4 1122 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 SNW1Q13573 536 aaKnown RBP13.49□□□□□ -0.25
VPS33A-201ENST00000267199 SMAP1Q8IYB5 467 aaPredicted RBP13.49□□□□□ -0.25
VPS33A-201ENST00000267199 DNAJC25Q9H1X3 360 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 CTNNA3Q9UI47 895 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 SKILP12757 684 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 U2AF2P26368 475 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS33A-201ENST00000267199 CCT2P78371 535 aaKnown RBP13.49□□□□□ -0.25
VPS33A-201ENST00000267199 FSIP1Q8NA03 581 aa13.49□□□□□ -0.25
VPS33A-201ENST00000267199 CBFA2T2O43439 604 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 CHMLP26374 656 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 CCDC47Q96A33 483 aaKnown RBP13.48□□□□□ -0.25
VPS33A-201ENST00000267199 CEP89Q96ST8 783 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 CHL1O00533 1208 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 PRDM15P57071 1507 aaPredicted RBP13.48□□□□□ -0.25
VPS33A-201ENST00000267199 UGGT1Q9NYU2 1555 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 FSD2A1L4K1 749 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 TIGD1Q96MW7 591 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 TMEM63CQ9P1W3 806 aa13.48□□□□□ -0.25
VPS33A-201ENST00000267199 U3KPZ7 1027 aaPredicted RBP13.48□□□□□ -0.25
VPS33A-201ENST00000267199 SMTNL1A8MU46 457 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 ATP5J2-PTCD1G3V325 749 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 ZNF445P59923 1031 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 ARHGAP29Q52LW3 1261 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 UBE3BQ7Z3V4 1068 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 LMBRD1Q9NUN5 540 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 FLT4P35916 1363 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 RDXP35241 583 aaKnown RBP13.47□□□□□ -0.25
VPS33A-201ENST00000267199 PKP1Q13835 747 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 TRIM34Q9BYJ4 488 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 PA2G4Q9UQ80 394 aaKnown RBP13.47□□□□□ -0.25
VPS33A-201ENST00000267199 PAXBP1Q9Y5B6 917 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 IFIT1P09914 478 aaKnown RBP13.47□□□□□ -0.25
VPS33A-201ENST00000267199 XBP1P17861 261 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 LUZP1Q86V48 1076 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 PHAXQ9H814 394 aaKnown RBP13.47□□□□□ -0.25
VPS33A-201ENST00000267199 MYO5CQ9NQX4 1742 aa13.47□□□□□ -0.25
VPS33A-201ENST00000267199 IDH1O75874 414 aaKnown RBP13.46□□□□□ -0.25
VPS33A-201ENST00000267199 F13A1P00488 732 aa13.46□□□□□ -0.25
VPS33A-201ENST00000267199 GTPBP4Q9BZE4 634 aaKnown RBP13.46□□□□□ -0.25
VPS33A-201ENST00000267199 TOP1P11387 765 aaKnown RBP13.46□□□□□ -0.25
VPS33A-201ENST00000267199 IBSPP21815 317 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms