RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 NBPF15Q8N660 670 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 TTLL6Q8N841 843 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 BRIP1Q9BX63 1249 aa12.88□□□□□ -0.35
VPS41-201ENST00000265745 H0YIN7 160 aa12.87□□□□□ -0.35
VPS41-201ENST00000265745 PRR5LQ6MZQ0 368 aa12.87□□□□□ -0.35
VPS41-201ENST00000265745 CLEC4GQ6UXB4 293 aa12.87□□□□□ -0.35
VPS41-201ENST00000265745 PNISRQ8TF01 805 aaKnown RBP12.87□□□□□ -0.35
VPS41-201ENST00000265745 CFAP44Q96MT7 982 aa12.87□□□□□ -0.35
VPS41-201ENST00000265745 THUMPD2Q9BTF0 503 aaKnown RBP12.87□□□□□ -0.35
VPS41-201ENST00000265745 KIF13BQ9NQT8 1826 aa12.87□□□□□ -0.35
VPS41-201ENST00000265745 CARMIL3Q8ND23 1372 aa12.86□□□□□ -0.35
VPS41-201ENST00000265745 PDE6BP35913 854 aa12.86□□□□□ -0.35
VPS41-201ENST00000265745 CCDC24Q8N4L8 307 aa12.86□□□□□ -0.35
VPS41-201ENST00000265745 PDZRN3Q9UPQ7 1066 aa12.86□□□□□ -0.35
VPS41-201ENST00000265745 KIAA1551Q9HCM1 1747 aa12.85□□□□□ -0.35
VPS41-201ENST00000265745 EIF4A1P60842 406 aaKnown RBP12.85□□□□□ -0.35
VPS41-201ENST00000265745 MAPK8IP3Q9UPT6 1336 aa12.85□□□□□ -0.35
VPS41-201ENST00000265745 UBR2Q8IWV8 1755 aa12.84□□□□□ -0.35
VPS41-201ENST00000265745 CNBD1Q8NA66 436 aa12.84□□□□□ -0.35
VPS41-201ENST00000265745 RNF181Q9P0P0 153 aa12.84□□□□□ -0.35
VPS41-201ENST00000265745 RIPK4P57078 832 aa12.83□□□□□ -0.36
VPS41-201ENST00000265745 ZNF622Q969S3 477 aaKnown RBP eCLIP12.83□□□□□ -0.366e-7■■■□□ 16.5
VPS41-201ENST00000265745 NMRK2Q9NPI5 230 aa12.83□□□□□ -0.36
VPS41-201ENST00000265745 ZNF652Q9Y2D9 606 aa12.83□□□□□ -0.36
VPS41-201ENST00000265745 N4BP2Q86UW6 1770 aaPredicted RBP12.83□□□□□ -0.36
VPS41-201ENST00000265745 NPHP1O15259 732 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 TOMM70O94826 608 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 SRGNP10124 158 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 HSPA6P17066 643 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 LMNB1P20700 586 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 PRELPP51888 382 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 ST5P78524 1137 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 RASSF7Q02833 373 aa12.82□□□□□ -0.36
VPS41-201ENST00000265745 NBPF5PQ86XG9 351 aaPredicted RBP12.82□□□□□ -0.36
VPS41-201ENST00000265745 CIZ1Q9ULV3 898 aaPredicted RBP12.82□□□□□ -0.36
VPS41-201ENST00000265745 MYBBP1AQ9BQG0 1328 aaKnown RBP12.82□□□□□ -0.36
VPS41-201ENST00000265745 NFKBIEO00221 500 aa12.81□□□□□ -0.36
VPS41-201ENST00000265745 TMPOP42166 694 aaKnown RBP12.81□□□□□ -0.36
VPS41-201ENST00000265745 HLFQ16534 295 aa12.81□□□□□ -0.36
VPS41-201ENST00000265745 TPTE2Q6XPS3 522 aa12.81□□□□□ -0.36
VPS41-201ENST00000265745 NIP7Q9Y221 180 aaKnown RBP eCLIP12.81□□□□□ -0.36
VPS41-201ENST00000265745 SIPA1L3O60292 1781 aaPredicted RBP12.8□□□□□ -0.36
VPS41-201ENST00000265745 KLRG2A4D1S0 409 aaPredicted RBP12.8□□□□□ -0.36
VPS41-201ENST00000265745 ERVV-1B6SEH8 477 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 C21orf2O43822 256 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 STYK1Q6J9G0 422 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 NGEFQ8N5V2 710 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 CNKSR1Q969H4 720 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 MASTLQ96GX5 879 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 TSPYL4Q9UJ04 414 aa12.8□□□□□ -0.36
VPS41-201ENST00000265745 RRP7AQ9Y3A4 280 aaKnown RBP12.8□□□□□ -0.36
VPS41-201ENST00000265745 PRKCSHP14314 528 aaPredicted RBP12.79□□□□□ -0.36
VPS41-201ENST00000265745 BABAM1Q9NWV8 329 aa12.79□□□□□ -0.36
VPS41-201ENST00000265745 KDM2BQ8NHM5 1336 aa12.79□□□□□ -0.36
VPS41-201ENST00000265745 ZC3H4Q9UPT8 1303 aaKnown RBP12.79□□□□□ -0.36
VPS41-201ENST00000265745 NRXN2Q9P2S2 1712 aa12.79□□□□□ -0.36
VPS41-201ENST00000265745 LMOD3Q0VAK6 560 aa12.78□□□□□ -0.36
VPS41-201ENST00000265745 PRPF40BQ6NWY9 871 aaKnown RBP12.78□□□□□ -0.36
VPS41-201ENST00000265745 TTLL7Q6ZT98 887 aa12.78□□□□□ -0.36
VPS41-201ENST00000265745 CCDC146Q8IYE0 955 aa12.78□□□□□ -0.36
VPS41-201ENST00000265745 C7orf43Q8WVR3 580 aa12.78□□□□□ -0.36
VPS41-201ENST00000265745 RRAGCQ9HB90 399 aa12.78□□□□□ -0.36
VPS41-201ENST00000265745 ZBTB47Q9UFB7 747 aaPredicted RBP12.78□□□□□ -0.36
VPS41-201ENST00000265745 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
VPS41-201ENST00000265745 GLTPD2A6NH11 291 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 FAM177BA6PVY3 158 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 MYL6BP14649 208 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 NPR1P16066 1061 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 SPRYD3Q8NCJ5 442 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 RBM46Q8TBY0 533 aaKnown RBP12.77□□□□□ -0.37
VPS41-201ENST00000265745 PRKRIP1Q9H875 184 aaPredicted RBP12.77□□□□□ -0.37
VPS41-201ENST00000265745 ADAMTS8Q9UP79 889 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 MAP3K15Q6ZN16 1313 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 CEP350Q5VT06 3117 aa12.77□□□□□ -0.37
VPS41-201ENST00000265745 WDR43Q15061 677 aaKnown RBP eCLIP12.76□□□□□ -0.37
VPS41-201ENST00000265745 PDIA6Q15084 440 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 NEUROD2Q15784 382 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 KIF6Q6ZMV9 814 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 LRP10Q7Z4F1 713 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 C16orf71Q8IYS4 520 aaPredicted RBP12.76□□□□□ -0.37
VPS41-201ENST00000265745 RUNDC1Q96C34 613 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 TRIM35Q9UPQ4 493 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 ERBB4Q15303 1308 aa12.76□□□□□ -0.37
VPS41-201ENST00000265745 CHL1O00533 1208 aa12.75□□□□□ -0.37
VPS41-201ENST00000265745 EIF2S2P20042 333 aaKnown RBP12.75□□□□□ -0.37
VPS41-201ENST00000265745 GTF2E1P29083 439 aaPredicted RBP12.75□□□□□ -0.37
VPS41-201ENST00000265745 BRCA1P38398 1863 aaKnown RBP12.75□□□□□ -0.37
VPS41-201ENST00000265745 ERFEQ4G0M1 354 aa12.75□□□□□ -0.37
VPS41-201ENST00000265745 SOGA3Q5TF21 947 aa12.75□□□□□ -0.37
VPS41-201ENST00000265745 NYXQ9GZU5 481 aa12.75□□□□□ -0.37
VPS41-201ENST00000265745 TAOK3Q9H2K8 898 aa12.75□□□□□ -0.37
VPS41-201ENST00000265745 LTBP3Q9NS15 1303 aa12.75□□□□□ -0.37
VPS41-201ENST00000265745 VIRMAQ69YN4 1812 aaKnown RBP12.74□□□□□ -0.37
VPS41-201ENST00000265745 VEGFAP15692 232 aaPredicted RBP12.74□□□□□ -0.37
VPS41-201ENST00000265745 APLP1P51693 650 aa12.74□□□□□ -0.37
VPS41-201ENST00000265745 PROSER3Q2NL68 480 aa12.74□□□□□ -0.37
VPS41-201ENST00000265745 GIGYF2Q6Y7W6 1299 aaKnown RBP12.74□□□□□ -0.37
VPS41-201ENST00000265745 NUTM1Q86Y26 1132 aa12.74□□□□□ -0.37
VPS41-201ENST00000265745 ZNF34Q8IZ26 560 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 294.4 ms