RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 ITPRIPQ8IWB1 547 aa12.37□□□□□ -0.43
SNRNP40-201ENST00000263694 PROM2Q8N271 834 aa12.37□□□□□ -0.43
SNRNP40-201ENST00000263694 ARXQ96QS3 562 aa12.37□□□□□ -0.43
SNRNP40-201ENST00000263694 CCDC87Q9NVE4 849 aa12.37□□□□□ -0.43
SNRNP40-201ENST00000263694 TAF1LQ8IZX4 1826 aa12.37□□□□□ -0.43
SNRNP40-201ENST00000263694 ERBB4Q15303 1308 aa12.36□□□□□ -0.43
SNRNP40-201ENST00000263694 TNS1Q9HBL0 1735 aaKnown RBP12.36□□□□□ -0.43
SNRNP40-201ENST00000263694 MAP3K2Q9Y2U5 619 aa12.36□□□□□ -0.43
SNRNP40-201ENST00000263694 ZNF831Q5JPB2 1677 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 CICQ96RK0 1608 aaPredicted RBP12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 MS4A1P11836 297 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 MVPQ14764 893 aaKnown RBP12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 KSR2Q6VAB6 950 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 TXNRD1Q16881 649 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 ANKRD13DQ6ZTN6 518 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 RIC3Q7Z5B4 369 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 DNAAF4Q8WXU2 420 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 ZBTB3Q9H5J0 574 aa12.35□□□□□ -0.43
SNRNP40-201ENST00000263694 DDX58O95786 925 aaKnown RBP12.34□□□□□ -0.43
SNRNP40-201ENST00000263694 INTS3Q68E01 1043 aaKnown RBP12.34□□□□□ -0.43
SNRNP40-201ENST00000263694 AMIGO3Q86WK7 504 aa12.34□□□□□ -0.43
SNRNP40-201ENST00000263694 TBC1D2BQ9UPU7 963 aa12.34□□□□□ -0.43
SNRNP40-201ENST00000263694 RREB1Q92766 1687 aa12.34□□□□□ -0.43
SNRNP40-201ENST00000263694 PLSCR1O15162 318 aa12.33□□□□□ -0.44
SNRNP40-201ENST00000263694 IL6STP40189 918 aaPredicted RBP12.33□□□□□ -0.44
SNRNP40-201ENST00000263694 EIF5P55010 431 aaKnown RBP12.33□□□□□ -0.44
SNRNP40-201ENST00000263694 ARFGEF2Q9Y6D5 1785 aa12.33□□□□□ -0.44
SNRNP40-201ENST00000263694 ZBTB7BO15156 539 aaPredicted RBP12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 EN1Q05925 392 aaPredicted RBP12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 CWF19L2Q2TBE0 894 aaKnown RBP12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 BEND3Q5T5X7 828 aa12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 PLBD2Q8NHP8 589 aa12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 MYD88Q99836 296 aa12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 C4BP0C0L5 1744 aa12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 NUP188Q5SRE5 1749 aa12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 CNTNAP4Q9C0A0 1308 aa12.32□□□□□ -0.44
SNRNP40-201ENST00000263694 ATP5J2-PTCD1G3V325 749 aa12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 GNPATO15228 680 aa12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 CCT4P50991 539 aaKnown RBP12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 EZH2Q15910 746 aaKnown RBP12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 HLFQ16534 295 aa12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 DEFB132Q7Z7B7 95 aa12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 DZIP3Q86Y13 1208 aaKnown RBP12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 METTL22Q9BUU2 404 aaPredicted RBP12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 C1orf115Q9H7X2 142 aa12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 DDX19BQ9UMR2 479 aa12.31□□□□□ -0.44
SNRNP40-201ENST00000263694 HAX1O00165 279 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 RPS6KA4O75676 772 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 IGKV5-2P06315 115 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 SLC27A3Q5K4L6 730 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 RC3H1Q5TC82 1133 aaKnown RBP12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 B4GALNT3Q6L9W6 998 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 KIF6Q6ZMV9 814 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 MEIS3Q99687 375 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 SRCIN1Q9C0H9 1055 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 ATF5Q9Y2D1 282 aaPredicted RBP12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 MAP3K15Q6ZN16 1313 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 PHF14O94880 888 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 NPM2Q86SE8 214 aaKnown RBP12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 JARID2Q92833 1246 aaPredicted RBP12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 AK7Q96M32 723 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 CAMKK2Q96RR4 588 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 ZBTB40Q9NUA8 1239 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 PPP4R2Q9NY27 417 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 COL15A1P39059 1388 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 NUP98P52948 1817 aa12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 AFDNP55196 1824 aaKnown RBP12.3□□□□□ -0.44
SNRNP40-201ENST00000263694 N4BP2Q86UW6 1770 aaPredicted RBP12.29□□□□□ -0.44
SNRNP40-201ENST00000263694 ERICH6BQ5W0A0 696 aa12.29□□□□□ -0.44
SNRNP40-201ENST00000263694 USP44Q9H0E7 712 aa12.29□□□□□ -0.44
SNRNP40-201ENST00000263694 FOXD4L1Q9NU39 408 aa12.29□□□□□ -0.44
SNRNP40-201ENST00000263694 PCDHB15Q9Y5E8 787 aa12.29□□□□□ -0.44
SNRNP40-201ENST00000263694 PXDNLA1KZ92 1463 aa12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 FXR2P51116 673 aaKnown RBP eCLIP12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 SF3B2Q13435 895 aaKnown RBP12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 ZNF827Q17R98 1081 aa12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 LINS1Q8NG48 757 aa12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 SRP68Q9UHB9 627 aaKnown RBP12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 RTCBQ9Y3I0 505 aaKnown RBP12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 ATP10DQ9P241 1426 aa12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 UBR3Q6ZT12 1888 aa12.28□□□□□ -0.44
SNRNP40-201ENST00000263694 NEURL1BA8MQ27 555 aa12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 CAMTA2O94983 1202 aa12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 NBPF7P0C2Y1 421 aaPredicted RBP12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 GPTP24298 496 aa12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 NEXNQ0ZGT2 675 aa12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 GIGYF2Q6Y7W6 1299 aaKnown RBP12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 ARHGEF1Q92888 912 aaKnown RBP12.27□□□□□ -0.44
SNRNP40-201ENST00000263694 PITPNM1O00562 1244 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 ALDH1L1O75891 902 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 TCIRG1Q13488 830 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 RTL5Q5HYW3 569 aaPredicted RBP12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 CCDC136Q96JN2 1154 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 ERVV-1B6SEH8 477 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 BAG6P46379 1132 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 GCKRQ14397 625 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 TRAPPC3LQ5T215 181 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 USPL1Q5W0Q7 1092 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 BCL2L12Q9HB09 334 aa12.26□□□□□ -0.45
SNRNP40-201ENST00000263694 C4AP0C0L4 1744 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms