RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ACEP12821 1306 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 CEP170Q5SW79 1584 aa12.5□□□□□ -0.41
CD44-201ENST00000263398 CNNM3Q8NE01 707 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 PUS7Q96PZ0 661 aaKnown RBP12.49□□□□□ -0.41
CD44-201ENST00000263398 KIF5CO60282 957 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 FBLN1P23142 703 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 STX1AQ16623 288 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 ZSCAN23Q3MJ62 389 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 LRSAM1Q6UWE0 723 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 IFIT3O14879 490 aaKnown RBP12.49□□□□□ -0.41
CD44-201ENST00000263398 PKNOX2Q96KN3 472 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 RBM27Q9P2N5 1060 aaKnown RBP12.49□□□□□ -0.41
CD44-201ENST00000263398 KDM5BQ9UGL1 1544 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 ZSCAN22P10073 491 aaPredicted RBP12.49□□□□□ -0.41
CD44-201ENST00000263398 USP16Q9Y5T5 823 aa12.49□□□□□ -0.41
CD44-201ENST00000263398 GOLGA8AA7E2F4 631 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 GOLIM4O00461 696 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 HCLS1P14317 486 aaPredicted RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 KIF4BQ2VIQ3 1234 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 CCDC82Q8N4S0 544 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 MRPL50Q8N5N7 158 aaKnown RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 TAF4BQ92750 862 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 C16orf45Q96MC5 204 aaPredicted RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 ZSCAN16Q9H4T2 348 aaPredicted RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 DENND4BO75064 1496 aaPredicted RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 TMEM132AQ24JP5 1023 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 UBE3BQ7Z3V4 1068 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 ESYT1Q9BSJ8 1104 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 CRACR2AQ9BSW2 395 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.48□□□□□ -0.415e-38■■■■■ 698.7
CD44-201ENST00000263398 ORC3Q9UBD5 711 aaPredicted RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 TRMT112Q9UI30 125 aaKnown RBP12.48□□□□□ -0.41
CD44-201ENST00000263398 ANKRD18BA2A2Z9 1011 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 SLC5A1P13866 664 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 SMC5Q8IY18 1101 aa12.48□□□□□ -0.41
CD44-201ENST00000263398 XRCC6P12956 609 aaKnown RBP eCLIP12.47□□□□□ -0.41
CD44-201ENST00000263398 SPA17Q15506 151 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 IFNL2Q8IZJ0 200 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 MKNK2Q9HBH9 465 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 PZPP20742 1482 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 IARSP41252 1262 aaKnown RBP12.47□□□□□ -0.41
CD44-201ENST00000263398 SSRP1Q08945 709 aaKnown RBP12.47□□□□□ -0.41
CD44-201ENST00000263398 C8orf58Q8NAV2 365 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 BICDL1Q6ZP65 573 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 ZSCAN29Q8IWY8 852 aaPredicted RBP12.47□□□□□ -0.41
CD44-201ENST00000263398 CENPHQ9H3R5 247 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 CLCN1P35523 988 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 ATP8B2P98198 1209 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 FKBP15Q5T1M5 1219 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 TRMT1Q9NXH9 659 aaKnown RBP12.47□□□□□ -0.41
CD44-201ENST00000263398 PIK3C2GO75747 1445 aa12.47□□□□□ -0.41
CD44-201ENST00000263398 RANBP6O60518 1105 aaKnown RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 NEFHP12036 1026 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 USP5P45974 858 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 ZBTB3Q9H5J0 574 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 SEC63Q9UGP8 760 aaKnown RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 NUTM2BA6NNL0 878 aaPredicted RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 NUTM2EB1AL46 878 aaPredicted RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 RLBP1P12271 317 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 FAM193AP78312 1265 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 TTF1Q15361 905 aaPredicted RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 LDHAL6AQ6ZMR3 332 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 NUTM2AQ8IVF1 878 aaPredicted RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 KLHL34Q8N239 644 aa12.46□□□□□ -0.41
CD44-201ENST00000263398 CGNQ9P2M7 1197 aaKnown RBP12.46□□□□□ -0.41
CD44-201ENST00000263398 RBM5P52756 815 aaKnown RBP eCLIP12.46□□□□□ -0.42
CD44-201ENST00000263398 PRIMPOLQ96LW4 560 aa12.46□□□□□ -0.42
CD44-201ENST00000263398 DCTPP1Q9H773 170 aa12.46□□□□□ -0.42
CD44-201ENST00000263398 CWC25Q9NXE8 425 aaPredicted RBP12.46□□□□□ -0.42
CD44-201ENST00000263398 PER1O15534 1290 aaPredicted RBP12.45□□□□□ -0.42
CD44-201ENST00000263398 ANXA1P04083 346 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 MAP9Q49MG5 647 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 ITSN2Q9NZM3 1697 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 TTC21AQ8NDW8 1320 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 ZNF76P36508 570 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 RAB34Q9BZG1 259 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 GOLGA6L7A0A1B0GV03 622 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 ATP5J2-PTCD1G3V325 749 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 BIN1O00499 593 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 PPP1R12BO60237 982 aaPredicted RBP12.45□□□□□ -0.42
CD44-201ENST00000263398 VAMP4O75379 141 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 POLR3DP05423 398 aaPredicted RBP12.45□□□□□ -0.42
CD44-201ENST00000263398 CASQ1P31415 396 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 GIMAP6Q6P9H5 292 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 ANKRD13DQ6ZTN6 518 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 BRF1Q92994 677 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 TEX13AQ9BXU3 409 aaPredicted RBP12.45□□□□□ -0.42
CD44-201ENST00000263398 ZBTB40Q9NUA8 1239 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 ALDH1L1O75891 902 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 SNRPA1P09661 255 aaKnown RBP12.45□□□□□ -0.42
CD44-201ENST00000263398 JAKMIP3Q5VZ66 844 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 NCOA7Q8NI08 942 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 SNRKQ9NRH2 765 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 POLKQ9UBT6 870 aa12.45□□□□□ -0.42
CD44-201ENST00000263398 CCDC194A0A1B0GVG4 234 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 GOLGA6L9A6NEM1 432 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 DYNC1I1O14576 645 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 CBX1P83916 185 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 CCDC102BQ68D86 513 aa12.44□□□□□ -0.42
CD44-201ENST00000263398 TMC6Q7Z403 805 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms