RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 ANKLE2Q86XL3 938 aa20.14■□□□□ 0.81
NOTCH3-201ENST00000263388 TNPO1Q92973 898 aaKnown RBP20.14■□□□□ 0.81
NOTCH3-201ENST00000263388 BCCIPQ9P287 314 aaKnown RBP eCLIP20.14■□□□□ 0.81
NOTCH3-201ENST00000263388 SNAPC4Q5SXM2 1469 aa20.14■□□□□ 0.81
NOTCH3-201ENST00000263388 CBX1P83916 185 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 SLC5A1P13866 664 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 ANKIB1Q9P2G1 1089 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 PPP1R1BQ9UD71 204 aaPredicted RBP20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 KIF21AQ7Z4S6 1674 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 BBXQ8WY36 941 aaPredicted RBP20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 KIF5BP33176 963 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 SPECC1Q5M775 1068 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 ARHGEF11O15085 1522 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 GRIPAP1Q4V328 841 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 TICAM2Q86XR7 235 aa20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 TTF1Q15361 905 aaPredicted RBP20.13■□□□□ 0.81
NOTCH3-201ENST00000263388 CALML4Q96GE6 196 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 HMG20BQ9P0W2 317 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 ZPR1O75312 459 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 ADCY5O95622 1261 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 STX6O43752 255 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 FSIP1Q8NA03 581 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 TCP11L1Q9NUJ3 509 aa20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 SNW1Q13573 536 aaKnown RBP20.12■□□□□ 0.81
NOTCH3-201ENST00000263388 IFI16Q16666 785 aaKnown RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 ZSCAN16Q9H4T2 348 aaPredicted RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 MAGI1Q96QZ7 1491 aaPredicted RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 SPECC1LQ69YQ0 1117 aa20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 CRACR2BQ8N4Y2 399 aaPredicted RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 NUDT16Q96DE0 195 aaKnown RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 DDX12PQ92771 950 aa20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 HLTFQ14527 1009 aaKnown RBP eCLIP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 TDRD12Q587J7 1177 aaKnown RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 CCDC194A0A1B0GVG4 234 aa20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 ZNF444Q8N0Y2 327 aaPredicted RBP20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 RALGAPBQ86X10 1494 aa20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 TTC21AQ8NDW8 1320 aa20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 PRIMPOLQ96LW4 560 aa20.11■□□□□ 0.81
NOTCH3-201ENST00000263388 CTNNBL1Q8WYA6 563 aaPredicted RBP20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 DDX23Q9BUQ8 820 aaKnown RBP20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 BMP2KLQ5H9B9 411 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 UBA5Q9GZZ9 404 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 MCM10Q7L590 875 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 CTNNA2P26232 953 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 STXBP4Q6ZWJ1 553 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 TMOD3Q9NYL9 352 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 CKAP2LQ8IYA6 745 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 SMARCA5O60264 1052 aaPredicted RBP20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 TBC1D2Q9BYX2 928 aa20.1■□□□□ 0.81
NOTCH3-201ENST00000263388 UVSSAQ2YD98 709 aa20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 C6orf163Q5TEZ5 329 aa20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 BAG4O95429 457 aaKnown RBP20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 SMARCC1Q92922 1105 aaPredicted RBP20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 ASXL1Q8IXJ9 1541 aa20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 RANBP6O60518 1105 aaKnown RBP20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 TMC6Q7Z403 805 aa20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 CCDC171Q6TFL3 1326 aa20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 MTIF2P46199 727 aaKnown RBP20.09■□□□□ 0.81
NOTCH3-201ENST00000263388 IFIT3O14879 490 aaKnown RBP20.08■□□□□ 0.81
NOTCH3-201ENST00000263388 USP25Q9UHP3 1055 aa20.08■□□□□ 0.81
NOTCH3-201ENST00000263388 MIS18AQ9NYP9 233 aa20.08■□□□□ 0.81
NOTCH3-201ENST00000263388 LAMC3Q9Y6N6 1575 aa20.08■□□□□ 0.81
NOTCH3-201ENST00000263388 TRMT1Q9NXH9 659 aaKnown RBP20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 FERMT1Q9BQL6 677 aa20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 FSD2A1L4K1 749 aa20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 NLRP5P59047 1200 aa20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 CEP135Q66GS9 1140 aa20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 XPCQ01831 940 aaPredicted RBP20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 RNF187Q5TA31 235 aaPredicted RBP20.08■□□□□ 0.8
NOTCH3-201ENST00000263388 CCDC172P0C7W6 258 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 TBC1D9Q6ZT07 1266 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 CCDC85AQ96PX6 553 aaPredicted RBP20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 PLVAPQ9BX97 442 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 TTC21BQ7Z4L5 1316 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 GJB2P29033 226 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 ZNF165P49910 485 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 DBF4Q9UBU7 674 aaPredicted RBP20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 BIVM-ERCC5R4GMW8 1640 aa20.07■□□□□ 0.8
NOTCH3-201ENST00000263388 JADE2Q9NQC1 790 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 UBE4AQ14139 1066 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 MACROD2A1Z1Q3 448 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 LRRC27Q9C0I9 530 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 CTAGE1Q96RT6 745 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 GOLIM4O00461 696 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 GUCY1B3Q02153 619 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 PPP4R3BQ5MIZ7 849 aa20.06■□□□□ 0.8
NOTCH3-201ENST00000263388 SSFA2P28290 1259 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 CKAP4Q07065 602 aaKnown RBP20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 CCDC96Q2M329 555 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 MYD88Q99836 296 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 SCAF11Q99590 1463 aaKnown RBP20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 TRIM27P14373 513 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 RMND1Q9NWS8 449 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 DNAAF4Q8WXU2 420 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 NCOA1Q15788 1441 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 BMS1Q14692 1282 aaKnown RBP20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 CEP112Q8N8E3 955 aa20.05■□□□□ 0.8
NOTCH3-201ENST00000263388 PDE4BQ07343 736 aa20.04■□□□□ 0.8
NOTCH3-201ENST00000263388 CCT2P78371 535 aaKnown RBP20.04■□□□□ 0.8
NOTCH3-201ENST00000263388 GOLGA8AA7E2F4 631 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms