RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 TXLNBQ8N3L3 684 aa21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 SPA17Q15506 151 aa21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 FAM135AQ9P2D6 1515 aa21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 IFNL2Q8IZJ0 200 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 NECAB1Q8N987 351 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 ANO10Q9NW15 660 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 CHPF2Q9P2E5 772 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 TSPY2A6NKD2 308 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 PPP1R12BO60237 982 aaPredicted RBP21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 CLIP2Q9UDT6 1046 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 TOP1P11387 765 aaKnown RBP21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 URI1O94763 535 aaPredicted RBP21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 KIAA0754O94854 1291 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 EVI5LQ96CN4 794 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 NUP88Q99567 741 aaPredicted RBP21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 FEZ1Q99689 392 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 KIAA0586Q9BVV6 1533 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 IDEP14735 1019 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 UBXN4Q92575 508 aa21.68■■□□□ 1.06
SMARCC1-201ENST00000254480 IQGAP2Q13576 1575 aa21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 FKBP15Q5T1M5 1219 aa21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 SCAND2PQ9GZW5 306 aaPredicted RBP21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 TDRD12Q587J7 1177 aaKnown RBP21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 SLC26A6Q9BXS9 759 aa21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 SH2B1Q9NRF2 756 aaPredicted RBP21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 ECM2O94769 699 aaPredicted RBP21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 CUL5Q93034 780 aa21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 TSG101Q99816 390 aa21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 CCDC66A2RUB6 948 aa21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 PRKCSHP14314 528 aaPredicted RBP21.67■■□□□ 1.06
SMARCC1-201ENST00000254480 CCDC178Q5BJE1 867 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 JAKMIP3Q5VZ66 844 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 CTNNBL1Q8WYA6 563 aaPredicted RBP21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 PTPN14Q15678 1187 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 ZRANB1Q9UGI0 708 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 CCDC148Q8NFR7 591 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 ABCC11Q96J66 1382 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 EIF3JO75822 258 aaKnown RBP21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 HSP90AA4PQ58FG1 418 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 MEIS3Q99687 375 aa21.66■■□□□ 1.06
SMARCC1-201ENST00000254480 MAPK8IP2Q13387 824 aaPredicted RBP21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 MMRN2Q9H8L6 949 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 LRPPRCP42704 1394 aaKnown RBP21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 RFC4P35249 363 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 USP8P40818 1118 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 TCERG1LQ5VWI1 586 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 CABLES1Q8TDN4 633 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 KIF4BQ2VIQ3 1234 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 GOPCQ9HD26 462 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 DNMBPQ6XZF7 1577 aa21.65■■□□□ 1.06
SMARCC1-201ENST00000254480 HMGB1P09429 215 aaKnown RBP21.64■■□□□ 1.06
SMARCC1-201ENST00000254480 PTPRCP08575 1304 aa21.64■■□□□ 1.06
SMARCC1-201ENST00000254480 TMEM266Q2M3C6 531 aa21.64■■□□□ 1.06
SMARCC1-201ENST00000254480 ZRSR2Q15696 482 aaKnown RBP21.64■■□□□ 1.05
SMARCC1-201ENST00000254480 IARSP41252 1262 aaKnown RBP21.64■■□□□ 1.05
SMARCC1-201ENST00000254480 CCDC97Q96F63 343 aaPredicted RBP21.64■■□□□ 1.05
SMARCC1-201ENST00000254480 RNF41Q9H4P4 317 aaPredicted RBP21.64■■□□□ 1.05
SMARCC1-201ENST00000254480 ORC3Q9UBD5 711 aaPredicted RBP21.64■■□□□ 1.05
SMARCC1-201ENST00000254480 SAMM50Q9Y512 469 aa21.64■■□□□ 1.05
SMARCC1-201ENST00000254480 CASQ1P31415 396 aa21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 IQCEQ6IPM2 695 aa21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 ANKRD18AQ8IVF6 992 aa21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 GBP2P32456 591 aaPredicted RBP21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 MFSD6Q6ZSS7 791 aa21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 STX8Q9UNK0 236 aa21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 PPP4R3AQ6IN85 833 aa21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 C16orf45Q96MC5 204 aaPredicted RBP21.63■■□□□ 1.05
SMARCC1-201ENST00000254480 METAP2P50579 478 aaKnown RBP eCLIP21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 NEK1Q96PY6 1258 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 ANKRD13DQ6ZTN6 518 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 KAT14Q9H8E8 782 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 KIF14Q15058 1648 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 STX6O43752 255 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 DESP17661 470 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 TMC6Q7Z403 805 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 XAGE3Q8WTP9 111 aa21.62■■□□□ 1.05
SMARCC1-201ENST00000254480 MTIF2P46199 727 aaKnown RBP21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 NBPF6Q5VWK0 638 aa21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 NBPF5PQ86XG9 351 aaPredicted RBP21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 NBPF4Q96M43 638 aa21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 CDC5LQ99459 802 aaKnown RBP21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 POTEJP0CG39 1038 aa21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 LRRC59Q96AG4 307 aaKnown RBP21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 C16orf71Q8IYS4 520 aaPredicted RBP21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 PRDM10Q9NQV6 1147 aa21.61■■□□□ 1.05
SMARCC1-201ENST00000254480 COPS6Q7L5N1 327 aa21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 BCCIPQ9P287 314 aaKnown RBP eCLIP21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 SNRPA1P09661 255 aaKnown RBP21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 ZSCAN30Q86W11 494 aa21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 KIF5CO60282 957 aa21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 PDCL2Q8N4E4 241 aa21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 TTC22Q5TAA0 569 aa21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 BRF1Q92994 677 aa21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 PA2G4Q9UQ80 394 aaKnown RBP21.6■■□□□ 1.05
SMARCC1-201ENST00000254480 RAB34Q9BZG1 259 aa21.59■■□□□ 1.05
SMARCC1-201ENST00000254480 GRM1Q13255 1194 aa21.59■■□□□ 1.05
SMARCC1-201ENST00000254480 PICALMQ13492 652 aa21.59■■□□□ 1.05
SMARCC1-201ENST00000254480 TNNQ9UQP3 1299 aa21.59■■□□□ 1.05
SMARCC1-201ENST00000254480 RHPN1Q8TCX5 695 aa21.58■■□□□ 1.05
SMARCC1-201ENST00000254480 CRACR2AQ9BSW2 395 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms