RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 C1orf167Q5SNV9 1468 aa19.83■□□□□ 0.76
HOXD3-201ENST00000249440 MST1RQ04912 1400 aa19.83■□□□□ 0.76
HOXD3-201ENST00000249440 HEG1Q9ULI3 1381 aa19.83■□□□□ 0.76
HOXD3-201ENST00000249440 SLIT3O75094 1523 aa19.83■□□□□ 0.76
HOXD3-201ENST00000249440 ANKRD24Q8TF21 1146 aa19.82■□□□□ 0.76
HOXD3-201ENST00000249440 RUFY2Q8WXA3 655 aa19.82■□□□□ 0.76
HOXD3-201ENST00000249440 NAP1L5Q96NT1 182 aaPredicted RBP19.82■□□□□ 0.76
HOXD3-201ENST00000249440 PXDNQ92626 1479 aa19.82■□□□□ 0.76
HOXD3-201ENST00000249440 GPATCH3Q96I76 525 aa19.82■□□□□ 0.76
HOXD3-201ENST00000249440 HYPKQ9NX55 129 aa19.82■□□□□ 0.76
HOXD3-201ENST00000249440 NSFL1CQ9UNZ2 370 aaKnown RBP19.81■□□□□ 0.76
HOXD3-201ENST00000249440 SYCE3A1L190 88 aa19.81■□□□□ 0.76
HOXD3-201ENST00000249440 ATF3P18847 181 aa19.81■□□□□ 0.76
HOXD3-201ENST00000249440 DIAPH3Q9NSV4 1193 aa19.81■□□□□ 0.76
HOXD3-201ENST00000249440 ECHDC1Q9NTX5 307 aa19.81■□□□□ 0.76
HOXD3-201ENST00000249440 ZSCAN30Q86W11 494 aa19.8■□□□□ 0.76
HOXD3-201ENST00000249440 TTC14Q96N46 770 aa19.8■□□□□ 0.76
HOXD3-201ENST00000249440 SYAP1Q96A49 352 aaPredicted RBP19.8■□□□□ 0.76
HOXD3-201ENST00000249440 DDX58O95786 925 aaKnown RBP19.79■□□□□ 0.76
HOXD3-201ENST00000249440 IFIT2P09913 472 aaKnown RBP19.79■□□□□ 0.76
HOXD3-201ENST00000249440 PROSER3Q2NL68 480 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 HS1BP3Q53T59 392 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 LMOD2Q6P5Q4 547 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 SPG7Q9UQ90 795 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 LTBP4Q8N2S1 1624 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 SIPA1L3O60292 1781 aaPredicted RBP19.79■□□□□ 0.76
HOXD3-201ENST00000249440 RASEFQ8IZ41 740 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 LINS1Q8NG48 757 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 LIMCH1Q9UPQ0 1083 aa19.79■□□□□ 0.76
HOXD3-201ENST00000249440 CAMTA1Q9Y6Y1 1673 aa19.78■□□□□ 0.76
HOXD3-201ENST00000249440 AK2P54819 239 aa19.78■□□□□ 0.76
HOXD3-201ENST00000249440 CWF19L2Q2TBE0 894 aaKnown RBP19.78■□□□□ 0.76
HOXD3-201ENST00000249440 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.78■□□□□ 0.76
HOXD3-201ENST00000249440 TCHHQ07283 1943 aa19.78■□□□□ 0.76
HOXD3-201ENST00000249440 PDLIM2Q96JY6 352 aa19.77■□□□□ 0.76
HOXD3-201ENST00000249440 MSNP26038 577 aaKnown RBP19.77■□□□□ 0.76
HOXD3-201ENST00000249440 DDX21Q9NR30 783 aaKnown RBP eCLIP19.77■□□□□ 0.76
HOXD3-201ENST00000249440 GRM8O00222 908 aa19.76■□□□□ 0.75
HOXD3-201ENST00000249440 EVI5LQ96CN4 794 aa19.76■□□□□ 0.75
HOXD3-201ENST00000249440 PRAMEF22A3QJZ6 481 aa19.76■□□□□ 0.75
HOXD3-201ENST00000249440 PA2G4Q9UQ80 394 aaKnown RBP19.76■□□□□ 0.75
HOXD3-201ENST00000249440 AXIN2Q9Y2T1 843 aa19.76■□□□□ 0.75
HOXD3-201ENST00000249440 UTYO14607 1347 aa19.76■□□□□ 0.75
HOXD3-201ENST00000249440 CASTP20810 708 aaKnown RBP19.75■□□□□ 0.75
HOXD3-201ENST00000249440 AACSQ86V21 672 aa19.75■□□□□ 0.75
HOXD3-201ENST00000249440 RPAP1Q9BWH6 1393 aaPredicted RBP19.75■□□□□ 0.75
HOXD3-201ENST00000249440 ADAMTS7Q9UKP4 1686 aa19.74■□□□□ 0.75
HOXD3-201ENST00000249440 PHF14O94880 888 aa19.74■□□□□ 0.75
HOXD3-201ENST00000249440 RUFY3Q7L099 469 aa19.74■□□□□ 0.75
HOXD3-201ENST00000249440 G3BP1Q13283 466 aaKnown RBP eCLIP19.74■□□□□ 0.75
HOXD3-201ENST00000249440 FOXD4L6Q3SYB3 417 aaPredicted RBP19.74■□□□□ 0.75
HOXD3-201ENST00000249440 FOXD4L3Q6VB84 417 aaPredicted RBP19.74■□□□□ 0.75
HOXD3-201ENST00000249440 USP48Q86UV5 1035 aa19.74■□□□□ 0.75
HOXD3-201ENST00000249440 TRPM3Q9HCF6 1732 aaPredicted RBP19.73■□□□□ 0.75
HOXD3-201ENST00000249440 HIP1O00291 1037 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 KRT28Q7Z3Y7 464 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 SUCLG2Q96I99 432 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 TM6SF1Q9BZW5 370 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 ZSCAN22P10073 491 aaPredicted RBP19.73■□□□□ 0.75
HOXD3-201ENST00000249440 AIMP1Q12904 312 aaKnown RBP19.73■□□□□ 0.75
HOXD3-201ENST00000249440 VPS53Q5VIR6 699 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 CADPS2Q86UW7 1296 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 TMEM87AQ8NBN3 555 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 BICC1Q9H694 974 aaKnown RBP19.73■□□□□ 0.75
HOXD3-201ENST00000249440 SMC3Q9UQE7 1217 aa19.73■□□□□ 0.75
HOXD3-201ENST00000249440 RGPD5Q99666 1765 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 STX6O43752 255 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 PTH1RQ03431 593 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 BRINP3Q76B58 766 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 KCNB2Q92953 911 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 KAZALD1Q96I82 304 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 GDPD2Q9HCC8 539 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 ATP6V1DQ9Y5K8 247 aa19.72■□□□□ 0.75
HOXD3-201ENST00000249440 ERBB3P21860 1342 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 PRPF40BQ6NWY9 871 aaKnown RBP19.71■□□□□ 0.75
HOXD3-201ENST00000249440 RIC3Q7Z5B4 369 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 TSPY26PQ9H489 355 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 SLAIN2Q9P270 581 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 SASH1O94885 1247 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 ZKSCAN1P17029 563 aaPredicted RBP19.71■□□□□ 0.75
HOXD3-201ENST00000249440 SYT1P21579 422 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 PDIA6Q15084 440 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 ZNF790Q6PG37 636 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 LARP1Q6PKG0 1096 aaKnown RBP19.71■□□□□ 0.75
HOXD3-201ENST00000249440 ZSCAN31Q96LW9 406 aaPredicted RBP19.71■□□□□ 0.75
HOXD3-201ENST00000249440 JAKMIP1Q96N16 626 aaKnown RBP19.71■□□□□ 0.75
HOXD3-201ENST00000249440 ZSWIM6Q9HCJ5 1215 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 PDRG1Q9NUG6 133 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 NOL7Q9UMY1 257 aaKnown RBP19.71■□□□□ 0.75
HOXD3-201ENST00000249440 CYP46A1Q9Y6A2 500 aa19.71■□□□□ 0.75
HOXD3-201ENST00000249440 GADD45BO75293 160 aaPredicted RBP19.7■□□□□ 0.74
HOXD3-201ENST00000249440 NEXNQ0ZGT2 675 aa19.7■□□□□ 0.74
HOXD3-201ENST00000249440 RAPGEF4Q8WZA2 1011 aa19.7■□□□□ 0.74
HOXD3-201ENST00000249440 DCCP43146 1447 aa19.7■□□□□ 0.74
HOXD3-201ENST00000249440 CCDC171Q6TFL3 1326 aa19.7■□□□□ 0.74
HOXD3-201ENST00000249440 NECTIN1Q15223 517 aa19.7■□□□□ 0.74
HOXD3-201ENST00000249440 EAF2Q96CJ1 260 aaPredicted RBP19.7■□□□□ 0.74
HOXD3-201ENST00000249440 LARP6Q9BRS8 491 aaKnown RBP19.7■□□□□ 0.74
HOXD3-201ENST00000249440 SH2B1Q9NRF2 756 aaPredicted RBP19.7■□□□□ 0.74
HOXD3-201ENST00000249440 KIF1AQ12756 1690 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms