RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 TADA2BQ86TJ2 420 aa15.28■□□□□ 0.04
MSH2-201ENST00000233146 FUT8Q9BYC5 575 aa15.28■□□□□ 0.04
MSH2-201ENST00000233146 NUP153P49790 1475 aaKnown RBP15.27■□□□□ 0.04
MSH2-201ENST00000233146 DNAAF4Q8WXU2 420 aa15.27■□□□□ 0.04
MSH2-201ENST00000233146 TROQ12816 1431 aaPredicted RBP15.27■□□□□ 0.04
MSH2-201ENST00000233146 CD109Q6YHK3 1445 aa15.27■□□□□ 0.04
MSH2-201ENST00000233146 ZRSR1Q15695 479 aaKnown RBP15.27■□□□□ 0.03
MSH2-201ENST00000233146 ARHGAP45Q92619 1136 aa15.27■□□□□ 0.03
MSH2-201ENST00000233146 ZNF428Q96B54 188 aa15.27■□□□□ 0.03
MSH2-201ENST00000233146 EFCAB8A8MWE9 144 aa15.27■□□□□ 0.03
MSH2-201ENST00000233146 KIF3CO14782 793 aa15.27■□□□□ 0.03
MSH2-201ENST00000233146 PPP2R5AQ15172 486 aa15.27■□□□□ 0.03
MSH2-201ENST00000233146 RBM43Q6ZSC3 357 aaKnown RBP15.27■□□□□ 0.03
MSH2-201ENST00000233146 PTCH1Q13635 1447 aa15.26■□□□□ 0.03
MSH2-201ENST00000233146 A0A087WUV0 522 aaPredicted RBP15.26■□□□□ 0.03
MSH2-201ENST00000233146 DNM1Q05193 864 aaKnown RBP15.26■□□□□ 0.03
MSH2-201ENST00000233146 SEMA3FQ13275 785 aa15.26■□□□□ 0.03
MSH2-201ENST00000233146 CAMK4Q16566 473 aa15.26■□□□□ 0.03
MSH2-201ENST00000233146 ZNF165P49910 485 aa15.26■□□□□ 0.03
MSH2-201ENST00000233146 E4F1Q66K89 784 aaPredicted RBP15.26■□□□□ 0.03
MSH2-201ENST00000233146 JMYQ8N9B5 988 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 PRG4Q92954 1404 aaPredicted RBP15.25■□□□□ 0.03
MSH2-201ENST00000233146 PPP1R13BQ96KQ4 1090 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 SRRTQ9BXP5 876 aaKnown RBP15.25■□□□□ 0.03
MSH2-201ENST00000233146 MTHFSP49914 203 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 KNDC1Q76NI1 1749 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 TTC37Q6PGP7 1564 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 TOPBP1Q92547 1522 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 PDS5BQ9NTI5 1447 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 CKAP2LQ8IYA6 745 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 TBC1D22AQ8WUA7 517 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 CFAP53Q96M91 514 aa15.25■□□□□ 0.03
MSH2-201ENST00000233146 ANKRD65E5RJM6 399 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 C21orf2O43822 256 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 TMPOP42166 694 aaKnown RBP15.24■□□□□ 0.03
MSH2-201ENST00000233146 ARFGAP3Q9NP61 516 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 ERVK-7P63135 1459 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 TTC21BQ7Z4L5 1316 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 U2AF1L5P0DN76 240 aaPredicted RBP15.24■□□□□ 0.03
MSH2-201ENST00000233146 LIG1P18858 919 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 U2AF1Q01081 240 aaKnown RBP eCLIP15.24■□□□□ 0.03
MSH2-201ENST00000233146 TACO1Q9BSH4 297 aaKnown RBP15.24■□□□□ 0.03
MSH2-201ENST00000233146 TNMDQ9H2S6 317 aa15.24■□□□□ 0.03
MSH2-201ENST00000233146 PSDA5PKW4 1024 aaPredicted RBP15.23■□□□□ 0.03
MSH2-201ENST00000233146 CALRP27797 417 aaKnown RBP15.23■□□□□ 0.03
MSH2-201ENST00000233146 IQGAP2Q13576 1575 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 ABCC4O15439 1325 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 MAP2K7O14733 419 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 CWC27Q6UX04 472 aaKnown RBP15.23■□□□□ 0.03
MSH2-201ENST00000233146 UPF3BQ9BZI7 483 aaKnown RBP15.23■□□□□ 0.03
MSH2-201ENST00000233146 USP16Q9Y5T5 823 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 SMC2O95347 1197 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 MNAT1P51948 309 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 LRRC31Q6UY01 552 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 TICAM2Q86XR7 235 aa15.23■□□□□ 0.03
MSH2-201ENST00000233146 GPR161Q8N6U8 529 aaKnown RBP15.23■□□□□ 0.03
MSH2-201ENST00000233146 PHLPP2Q6ZVD8 1323 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 CAVIN2O95810 425 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 GORABQ5T7V8 394 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 DNAJC25Q9H1X3 360 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 MSH6P52701 1360 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 SGSM2O43147 1006 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 SCP2P22307 547 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 BIRC2Q13490 618 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 KAT2BQ92831 832 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 SYTL4Q96C24 671 aaPredicted RBP15.22■□□□□ 0.03
MSH2-201ENST00000233146 ESYT1Q9BSJ8 1104 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 ARHGEF5Q12774 1597 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 KLHL33A6NCF5 533 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 TSPY4P0CV99 314 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 TSPY10P0CW01 314 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 HNRNPH1P31943 449 aaKnown RBP15.22■□□□□ 0.03
MSH2-201ENST00000233146 EVCP57679 992 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 IQCB1Q15051 598 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 MICALL1Q8N3F8 863 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 PRAM1Q96QH2 718 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 PLEKHF1Q96S99 279 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 VPS18Q9P253 973 aa15.22■□□□□ 0.03
MSH2-201ENST00000233146 KCNJ6P48051 423 aa15.21■□□□□ 0.03
MSH2-201ENST00000233146 MRPL50Q8N5N7 158 aaKnown RBP15.21■□□□□ 0.03
MSH2-201ENST00000233146 ETF1P62495 437 aaKnown RBP15.21■□□□□ 0.03
MSH2-201ENST00000233146 LRRFIP1Q32MZ4 808 aaKnown RBP15.21■□□□□ 0.03
MSH2-201ENST00000233146 PLEKHO1Q53GL0 409 aaPredicted RBP15.21■□□□□ 0.03
MSH2-201ENST00000233146 NBPF10Q6P3W6 841 aaKnown RBP15.21■□□□□ 0.03
MSH2-201ENST00000233146 STAG1Q8WVM7 1258 aa15.21■□□□□ 0.03
MSH2-201ENST00000233146 EPC1Q9H2F5 836 aa15.21■□□□□ 0.03
MSH2-201ENST00000233146 EIF5P55010 431 aaKnown RBP15.2■□□□□ 0.02
MSH2-201ENST00000233146 GSDMDP57764 484 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 FAXDC2Q96IV6 333 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 CARD6Q9BX69 1037 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 MTMR6Q9Y217 621 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 FAM135BQ49AJ0 1406 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 TTC41PQ6P2S7 1318 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 GNAI3P08754 354 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 KCNV1Q6PIU1 500 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 TTC6Q86TZ1 520 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 A1CFQ9NQ94 594 aaKnown RBP15.2■□□□□ 0.02
MSH2-201ENST00000233146 DACT1Q9NYF0 836 aa15.2■□□□□ 0.02
MSH2-201ENST00000233146 YTHDC2Q9H6S0 1430 aaKnown RBP15.2■□□□□ 0.02
MSH2-201ENST00000233146 USP8P40818 1118 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms