RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 RAB3GAP1Q15042 981 aa10.07□□□□□ -0.8
VAMP3-201ENST00000054666 USP42Q9H9J4 1324 aaKnown RBP10.06□□□□□ -0.8
VAMP3-201ENST00000054666 IFIT2P09913 472 aaKnown RBP10.06□□□□□ -0.8
VAMP3-201ENST00000054666 ANAPC15P60006 121 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 COPS6Q7L5N1 327 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 ZCRB1Q8TBF4 217 aaKnown RBP10.06□□□□□ -0.8
VAMP3-201ENST00000054666 PI4K2BQ8TCG2 481 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 SUCLG2Q96I99 432 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 MYD88Q99836 296 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 METTL22Q9BUU2 404 aaPredicted RBP10.06□□□□□ -0.8
VAMP3-201ENST00000054666 ERBB4Q15303 1308 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 NEURL1BA8MQ27 555 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 MCM2P49736 904 aa10.06□□□□□ -0.8
VAMP3-201ENST00000054666 G3BP1Q13283 466 aaKnown RBP eCLIP10.06□□□□□ -0.8
VAMP3-201ENST00000054666 BICC1Q9H694 974 aaKnown RBP10.06□□□□□ -0.8
VAMP3-201ENST00000054666 NHSL1Q5SYE7 1610 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 AFDNP55196 1824 aaKnown RBP10.05□□□□□ -0.8
VAMP3-201ENST00000054666 IL2RBP14784 551 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 ANKRD13DQ6ZTN6 518 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 UNC5CLQ8IV45 518 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 TNPO1Q92973 898 aaKnown RBP10.05□□□□□ -0.8
VAMP3-201ENST00000054666 ARFGEF2Q9Y6D5 1785 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 GOLGA6L22H0YM25 854 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 IGKV5-2P06315 115 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 GCKRQ14397 625 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 CARD10Q9BWT7 1032 aa10.05□□□□□ -0.8
VAMP3-201ENST00000054666 PA2G4Q9UQ80 394 aaKnown RBP10.05□□□□□ -0.8
VAMP3-201ENST00000054666 GLI3P10071 1580 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 ERVV-2B6SEH9 535 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 EVA1CP58658 441 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 NUCB2P80303 420 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 IL27Q8NEV9 243 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 CWC22Q9HCG8 908 aaKnown RBP10.04□□□□□ -0.8
VAMP3-201ENST00000054666 STRN4Q9NRL3 753 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 ECHDC1Q9NTX5 307 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 USP16Q9Y5T5 823 aa10.04□□□□□ -0.8
VAMP3-201ENST00000054666 TRAK2O60296 914 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 MAP4K4O95819 1239 aaPredicted RBP10.03□□□□□ -0.8
VAMP3-201ENST00000054666 KIAA1211Q6ZU35 1233 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 AACSQ86V21 672 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 RUFY2Q8WXA3 655 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 DIAPH3Q9NSV4 1193 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 UBR2Q8IWV8 1755 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 KDM4FA0A1W2PPD8 638 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 NEK4P51957 841 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 PAPPAQ13219 1627 aa10.03□□□□□ -0.8
VAMP3-201ENST00000054666 RAD50Q92878 1312 aa10.02□□□□□ -0.8
VAMP3-201ENST00000054666 SGSM2O43147 1006 aa10.02□□□□□ -0.81
VAMP3-201ENST00000054666 PIP4K2AP48426 406 aaPredicted RBP10.02□□□□□ -0.81
VAMP3-201ENST00000054666 L1TD1Q5T7N2 865 aaKnown RBP10.02□□□□□ -0.81
VAMP3-201ENST00000054666 LRP10Q7Z4F1 713 aa10.02□□□□□ -0.81
VAMP3-201ENST00000054666 PLBD2Q8NHP8 589 aa10.02□□□□□ -0.81
VAMP3-201ENST00000054666 KAZALD1Q96I82 304 aa10.02□□□□□ -0.81
VAMP3-201ENST00000054666 COL15A1P39059 1388 aa10.02□□□□□ -0.81
VAMP3-201ENST00000054666 SHANK3Q9BYB0 1731 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 HIP1O00291 1037 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 SSFA2P28290 1259 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 NKX1-1Q15270 411 aaPredicted RBP10.01□□□□□ -0.81
VAMP3-201ENST00000054666 SKOR2Q2VWA4 1001 aaPredicted RBP10.01□□□□□ -0.81
VAMP3-201ENST00000054666 DDX54Q8TDD1 881 aaKnown RBP10.01□□□□□ -0.81
VAMP3-201ENST00000054666 EVI5LQ96CN4 794 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 SIL1Q9H173 461 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 KCPQ6ZWJ8 1503 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 HSPA4P34932 840 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 CWC27Q6UX04 472 aaKnown RBP10.01□□□□□ -0.81
VAMP3-201ENST00000054666 UBE3BQ7Z3V4 1068 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 IL17RAQ96F46 866 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 PALD1Q9ULE6 856 aa10.01□□□□□ -0.81
VAMP3-201ENST00000054666 A0A087WZG4 1122 aa10□□□□□ -0.81
VAMP3-201ENST00000054666 SASH1O94885 1247 aa10□□□□□ -0.81
VAMP3-201ENST00000054666 TNS2Q63HR2 1409 aa10□□□□□ -0.81
VAMP3-201ENST00000054666 TMX3Q96JJ7 454 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 GZF1Q9H116 711 aaPredicted RBP9.99□□□□□ -0.81
VAMP3-201ENST00000054666 TMOD3Q9NYL9 352 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 GOLGA6L3A6NEY3 463 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 ATP5J2-PTCD1G3V325 749 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 PTCD1O75127 700 aaKnown RBP9.99□□□□□ -0.81
VAMP3-201ENST00000054666 RABL6Q3YEC7 729 aaPredicted RBP9.99□□□□□ -0.81
VAMP3-201ENST00000054666 CLEC17AQ6ZS10 378 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 IL25Q9H293 177 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 COPRSQ9NQ92 184 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 NUP188Q5SRE5 1749 aa9.99□□□□□ -0.81
VAMP3-201ENST00000054666 ZGPATQ8N5A5 531 aaKnown RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 EAF2Q96CJ1 260 aaPredicted RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 LSG1Q9H089 658 aaKnown RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 CCDC8Q9H0W5 538 aaPredicted RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 CWC25Q9NXE8 425 aaPredicted RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 TOGARAM1Q9Y4F4 1720 aa9.98□□□□□ -0.81
VAMP3-201ENST00000054666 BAG4O95429 457 aaKnown RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 EPHA10Q5JZY3 1008 aa9.98□□□□□ -0.81
VAMP3-201ENST00000054666 NOL8Q76FK4 1167 aaKnown RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 KLHDC4Q8TBB5 520 aa9.98□□□□□ -0.81
VAMP3-201ENST00000054666 FSD1Q9BTV5 496 aa9.98□□□□□ -0.81
VAMP3-201ENST00000054666 UPF3BQ9BZI7 483 aaKnown RBP9.98□□□□□ -0.81
VAMP3-201ENST00000054666 CHMP3Q9Y3E7 222 aa9.98□□□□□ -0.81
VAMP3-201ENST00000054666 COL14A1Q05707 1796 aaKnown RBP9.97□□□□□ -0.81
VAMP3-201ENST00000054666 NBPF26B4DH59 902 aa9.97□□□□□ -0.81
VAMP3-201ENST00000054666 CYP2E1P05181 493 aaPredicted RBP9.97□□□□□ -0.81
VAMP3-201ENST00000054666 NBPF14Q5TI25 921 aa9.97□□□□□ -0.81
VAMP3-201ENST00000054666 NBPF10Q6P3W6 841 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms