RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 IFIT3O14879 490 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 CHUKO15111 745 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 LRRTM2O43300 516 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 FIBPO43427 364 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SYT7O43581 403 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NUDT21O43809 227 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 KIAA0513O60268 411 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TSPAN2O60636 221 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ATP9AO75110 1047 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 DUSP11O75319 330 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 RHBDL1O75783 438 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 GRAP2O75791 330 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ANXA9O76027 345 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 GLCEO94923 617 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 LETM1O95202 739 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 SLC2A10O95528 541 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CPNE6O95741 557 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TXNDC12O95881 172 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 EPOP01588 193 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 HSPB1P04792 205 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 RLN1P04808 185 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 FCGR3AP08637 254 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 WNT2P09544 360 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SBK2P0C263 348 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SLC35E2P0CK97 266 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CT45A10P0DMU9 189 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CT45A8P0DMV1 189 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CT45A9P0DMV2 189 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 VDRP11473 427 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 P4HA1P13674 534 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 GLULP15104 373 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CASTP20810 708 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 MDKP21741 143 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZP3P21754 424 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 UCP1P25874 307 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 GDF1P27539 372 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 PTPN4P29074 926 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 HMGCLP35914 325 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RGRP47804 291 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NPBWR1P48145 328 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 POU3F4P49335 361 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NDST1P52848 882 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CAPZA1P52907 286 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SLC25A1P53007 311 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 HMGCS2P54868 508 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 MFAP2P55001 183 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 HAND2P61296 217 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 AKAP17AQ02040 695 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 CALD1Q05682 793 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 GABPAQ06546 454 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ARHGAP1Q07960 439 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 EGFEM1PQ0D2K5 195 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 HSPA14Q0VDF9 509 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CETN1Q12798 172 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TFCP2Q12800 502 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 PSG7Q13046 419 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 PRPF4BQ13523 1007 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 KLF5Q13887 457 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 DPYSL3Q14195 570 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 GK2Q14410 553 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 HEPACAMQ14CZ8 416 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 KRT31Q15323 416 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 IL17AQ16552 155 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ACKR1Q16570 336 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SGCBQ16585 318 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 MEP1BQ16820 701 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 PPP1R3AQ16821 1122 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ISXQ2M1V0 245 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TWISTNBQ3B726 338 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZNF528Q3MIS6 628 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TTC31Q49AM3 519 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 IQCCQ4KMZ1 466 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CT45A2Q5DJT8 189 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SPOUT1Q5T280 376 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 LYPLAL1Q5VWZ2 237 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CAVIN1Q6NZI2 390 aaKnown RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 Q6P435 159 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 RFPL4BQ6ZWI9 263 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 MOB2Q70IA6 237 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 OTOAQ7RTW8 1153 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ADCK2Q7Z695 626 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ASPGQ86U10 573 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 SLC22A16Q86VW1 577 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD46Q86W74 232 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TGIF2LYQ8IUE0 185 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TBC1D10CQ8IV04 446 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CROCCP3Q8IVE0 287 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 THNSL1Q8IYQ7 743 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 H1FOOQ8IZA3 346 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 NUP93Q8N1F7 819 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ELMOD1Q8N336 334 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 FBXW8Q8N3Y1 598 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZNF561Q8N587 486 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 ZNF433Q8N7K0 673 aaPredicted RBP0.26□□□□□ -2.37
VPS35-212ENST00000640313 SAMD12Q8N8I0 201 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 NHLRC2Q8NBF2 726 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 KIAA0895Q8NCT3 520 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 CCDC197Q8NCU1 140 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 TRPV3Q8NET8 790 aa0.26□□□□□ -2.37
VPS35-212ENST00000640313 BEST4Q8NFU0 473 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms