RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 WWTR1Q9GZV5 400 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 GPRC5BQ9NZH0 403 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 CHMP2BQ9UQN3 213 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 FAM95CA0A1B0GW59 222 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 TRIM64A6NGJ6 449 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 TRIM64BA6NI03 449 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 COL6A5A8TX70 2615 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 TP53I11O14683 189 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 OR10H2O60403 315 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 PRAMEF4O60810 478 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 PRKRAO75569 313 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 PCNAP12004 261 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 BMP7P18075 431 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 CD22P20273 847 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 HIST1H1TP22492 207 aaPredicted RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 HSPA7P48741 367 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 CDK9P50750 372 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 FBXW4P57775 412 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 FOXF2Q12947 444 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 RCAN2Q14206 197 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 PPP1R7Q15435 360 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 NTRK2Q16620 822 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 AP5B1Q2VPB7 878 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 WIPI1Q5MNZ9 446 aaPredicted RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 TBCELQ5QJ74 424 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 PRAMEF9Q5VWM5 478 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 VASNQ6EMK4 673 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 SYDE1Q6ZW31 735 aaPredicted RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 YTHDF3Q7Z739 585 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 SIMC1Q8NDZ2 872 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 SRFBP1Q8NEF9 429 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 TRIM58Q8NG06 486 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 SPATA3Q8NHX4 192 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 NANOS1Q8WY41 292 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 SMPDL3BQ92485 455 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 MED12Q93074 2177 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 PERPQ96FX8 193 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 WDYHV1Q96HA8 205 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 RILPQ96NA2 401 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 GNRHR2Q96P88 292 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 EFCAB11Q9BUY7 163 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 SORBS1Q9BX66 1292 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 PHACTR1Q9C0D0 580 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 EHD1Q9H4M9 534 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 RPF2Q9H7B2 306 aaKnown RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 JKAMPQ9P055 326 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 C6orf203Q9P0P8 240 aaPredicted RBP13.43□□□□□ -0.26
PNKP-218ENST00000625299 C15orf41Q9Y2V0 281 aa13.43□□□□□ -0.26
PNKP-218ENST00000625299 TAPBPO15533 448 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 IL18BPO95998 194 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 TGFB1P01137 390 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 HPNP05981 417 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 ALOX15P16050 662 aaPredicted RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 CPOXP36551 454 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 TAS2R39P59534 338 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 IGLV3-21P80748 117 aaPredicted RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 SLAMF1Q13291 335 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 EBPQ15125 230 aaKnown RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 RPS6KA2Q15349 733 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 TGFBIQ15582 683 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 PDK4Q16654 411 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 HIST2H2ACQ16777 129 aaPredicted RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 PAGE2BQ5JRK9 111 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 HIST2H2AA3Q6FI13 130 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 PACS2Q86VP3 889 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 TAGAPQ8N103 731 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 SPATA6LQ8N4H0 392 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 BBOF1Q8ND07 529 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 C7orf57Q8NEG2 295 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 ANKRD7Q92527 254 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 ABTB1Q969K4 478 aaPredicted RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 ISL2Q96A47 359 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 BDH2Q9BUT1 245 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 MS4A8Q9BY19 250 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 CNOT10Q9H9A5 744 aaKnown RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 UBTD1Q9HAC8 227 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 PLAC1Q9HBJ0 212 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 TEX10Q9NXF1 929 aaPredicted RBP13.42□□□□□ -0.26
PNKP-218ENST00000625299 ASIC3Q9UHC3 531 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 PSAT1Q9Y617 370 aa13.42□□□□□ -0.26
PNKP-218ENST00000625299 GNB5O14775 395 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 CCNT2O60583 730 aaKnown RBP13.41□□□□□ -0.26
PNKP-218ENST00000625299 CYP4B1P13584 511 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 ELK3P41970 407 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 SLCO1A2P46721 670 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 IRF8Q02556 426 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 C18orf63Q68DL7 685 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 PLXDC2Q6UX71 529 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 YRDCQ86U90 279 aaKnown RBP13.41□□□□□ -0.26
PNKP-218ENST00000625299 LRRC75A-AS1Q8N1F1 130 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 TCAIMQ8N3R3 496 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 GRK7Q8WTQ7 553 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 ZNF473Q8WTR7 871 aaKnown RBP13.41□□□□□ -0.26
PNKP-218ENST00000625299 SLC44A1Q8WWI5 657 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 RIT1Q92963 219 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 EXT2Q93063 718 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 PIGTQ969N2 578 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 VPS39Q96JC1 886 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 CCL19Q99731 98 aa13.41□□□□□ -0.26
PNKP-218ENST00000625299 UBQLN3Q9H347 655 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms