RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ERP29P30040 261 aaKnown RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 ABATP80404 500 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 SUZ12Q15022 739 aaKnown RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 C17orf99Q6UX52 265 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 SETD6Q8TBK2 473 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 ZNF480Q8WV37 535 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 HMX1Q9NP08 348 aaPredicted RBP11.99□□□□□ -0.49
LIG1-221ENST00000613670 HCN2Q9UL51 889 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 GPSM3Q9Y4H4 160 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 PCDHGB2Q9Y5G2 931 aa11.99□□□□□ -0.49
LIG1-221ENST00000613670 A0A1W2PPK0 400 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 HLA-DPB1P04440 258 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 EPHX1P07099 455 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 WNT3P56703 355 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 SLC3A1Q07837 685 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 CDKL4Q5MAI5 379 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 XKRXQ6PP77 449 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 FAM124AQ86V42 546 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 GLCCI1Q86VQ1 547 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR6C4Q8NGE1 309 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR9A1PQ8NGU1 263 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR52P1PQ8NH57 321 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 SECISBP2Q96T21 854 aaKnown RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 CNIH4Q9P003 139 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 FZD6O60353 706 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 C1SP09871 688 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 CHRNB1P11230 501 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 PNLIPRP1P54315 467 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 KCNC3Q14003 757 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 KLBQ86Z14 1044 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 CCDC28AQ8IWP9 274 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 CDK20Q8IZL9 346 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 TBC1D19Q8N5T2 526 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 HORMAD2Q8N7B1 307 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 SAMD12Q8N8I0 201 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR52L1Q8NGH7 329 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 PIGXQ8TBF5 258 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 ZNF431Q8TF32 576 aaPredicted RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 SLC7A6Q92536 515 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 FERD3LQ96RJ6 166 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 C17orf62Q9BQA9 187 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 PRR14Q9BWN1 585 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 ABCG5Q9H222 651 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 ENAMQ9NRM1 1142 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 PLCXD1Q9NUJ7 323 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 TXNL4BQ9NX01 149 aaKnown RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 MRPL39Q9NYK5 338 aaKnown RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 SIP14410 1827 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 LYRM1O43325 122 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 AKAP8O43823 692 aaKnown RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR5F1O95221 314 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 CD160O95971 181 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 SCG5P05408 212 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 IMPA1P29218 277 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 MTNR1AP48039 350 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 HOXC5Q00444 222 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 SLC27A4Q6P1M0 643 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 BRAT1Q6PJG6 821 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 GDPD1Q8N9F7 314 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR5H6Q8NGV6 325 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 OR6F1Q8NGZ6 308 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG1-221ENST00000613670 ADAMTS15Q8TE58 950 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 RFKQ969G6 155 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 RETREG1Q9H6L5 497 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 C3orf14Q9HBI5 128 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 MAT2BQ9NZL9 334 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 EIF3KQ9UBQ5 218 aaKnown RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 CDV3Q9UKY7 258 aaKnown RBP11.98□□□□□ -0.49
LIG1-221ENST00000613670 NCKAP1Q9Y2A7 1128 aa11.98□□□□□ -0.49
LIG1-221ENST00000613670 LEFTY2O00292 366 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 CHST10O43529 356 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 C8AP07357 584 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 SRPRAP08240 638 aaKnown RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 SLC35G4P0C7Q5 338 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ZDHHC11BP0C7U3 371 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 CD22P20273 847 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 RPS25P62851 125 aaKnown RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 B4GALNT1Q00973 533 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 MTAPQ13126 283 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 GPR19Q15760 415 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 SYPL1Q16563 259 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 BHLHB9Q6PI77 547 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 RD3Q7Z3Z2 195 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 KLHL36Q8N4N3 616 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 OR7G1Q8NGA0 311 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 DOK4Q8TEW6 326 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 LINC01599Q8WXQ3 324 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 IGSF21Q96ID5 467 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 OPALINQ96PE5 141 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 CLSTN3Q9BQT9 956 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 LINC00597Q9H2U6 94 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 FBXL12Q9NXK8 326 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 TNFRSF10DQ9UBN6 386 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 TSPAN4O14817 238 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 EEF1E1O43324 174 aaKnown RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 PRAMEF4O60810 478 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 SAGP10523 405 aaPredicted RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 HMGA1P17096 107 aaKnown RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 SLC6A12P48065 614 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms