RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SPATA9Q9BWV2 254 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 RBCK1Q9BYM8 510 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 RASSF4Q9H2L5 321 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 SERHL2Q9H4I8 314 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 FANCEQ9HB96 536 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 RAPGEFL1Q9UHV5 662 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 PRDM4Q9UKN5 801 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 CLCA2Q9UQC9 943 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 MAU2Q9Y6X3 613 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 CCDC88CQ9P219 2028 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 TGFBR3LH3BV60 316 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 DSCR3O14972 297 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 TIAF1O95411 115 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 OR1D4P47884 311 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 FADDQ13158 208 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 TRA2AQ13595 282 aaKnown RBP eCLIP13.39□□□□□ -0.27
USP39-220ENST00000613444 SNCBQ16143 134 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 VMACQ2NL98 169 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 AASDHQ4L235 1098 aaPredicted RBP13.39□□□□□ -0.27
USP39-220ENST00000613444 PHF19Q5T6S3 580 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 MED25Q71SY5 747 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 C6orf120Q7Z4R8 191 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 TNIP2Q8NFZ5 429 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 OR52E4Q8NGH9 312 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 OR51Q1Q8NH59 317 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 ADAMTS18Q8TE60 1221 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 ELP4Q96EB1 424 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 NDC1Q9BTX1 674 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 OCIAD1Q9NX40 245 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 NTMQ9P121 344 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 MAP4K5Q9Y4K4 846 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 AGRPO00253 132 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 CXCR6O00574 342 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 ATP1B1P05026 303 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 PORP16435 677 aaPredicted RBP13.39□□□□□ -0.27
USP39-220ENST00000613444 ALAS2P22557 587 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 GPC1P35052 558 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 CRATP43155 626 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 ARSFP54793 590 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 POLE2P56282 527 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 IGLV3-21P80748 117 aaPredicted RBP13.39□□□□□ -0.27
USP39-220ENST00000613444 EEF1A2Q05639 463 aaKnown RBP13.39□□□□□ -0.27
USP39-220ENST00000613444 ERV3-1Q14264 604 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 TMEM107Q6UX40 140 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 BMPERQ8N8U9 685 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 GOLM1Q8NBJ4 401 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 ADCY4Q8NFM4 1077 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 FAM110BQ8TC76 370 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 SFXN5Q8TD22 340 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 FIG4Q92562 907 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 MAL2Q969L2 176 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 LRGUKQ96M69 825 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 ASPSCR1Q9BZE9 553 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 SEMA3GQ9NS98 782 aa13.39□□□□□ -0.27
USP39-220ENST00000613444 A0A1B0GX78 115 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 PLOD2O00469 737 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 LRP3O75074 770 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 NBL1P41271 181 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 MC3RP41968 323 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 RPS26P62854 115 aaKnown RBP13.38□□□□□ -0.27
USP39-220ENST00000613444 AP2B1P63010 937 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ZNF628Q5EBL2 1059 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 RHBDD2Q6NTF9 364 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ERICH5Q6P6B1 374 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ANGPTL8Q6UXH0 198 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ZNF595Q8IYB9 648 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ADGRG5Q8IZF4 528 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 HORMAD2Q8N7B1 307 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 SLC38A9Q8NBW4 561 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 OR7G2Q8NG99 324 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 NETO1Q8TDF5 533 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 CANT1Q8WVQ1 401 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 KAT2AQ92830 837 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 NSMCE2Q96MF7 247 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 TRIM15Q9C019 465 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ANKRA2Q9H9E1 313 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 LANCL2Q9NS86 450 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ZCCHC3Q9NUD5 404 aaKnown RBP13.38□□□□□ -0.27
USP39-220ENST00000613444 FAM86C1Q9NVL1 165 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 CFAP54Q96N23 3096 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ZNF292O60281 2723 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 MYOCOSA0A1B0GUC4 107 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 BLACEA4D250 179 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 OR2W5A6NFC9 320 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 C4orf47A7E2U8 309 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 CTNSO60931 367 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 JRKO75564 520 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 CREG1O75629 220 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 SLC34A2O95436 690 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 STAMBPO95630 424 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 ANPEPP15144 967 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 XCR1P46094 333 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 BTG2P78543 158 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 MRPS35P82673 323 aaKnown RBP13.38□□□□□ -0.27
USP39-220ENST00000613444 MGAT2Q10469 447 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 VEZF1Q14119 521 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 DSG2Q14126 1118 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 SPDYE7PQ495Y7 208 aa13.38□□□□□ -0.27
USP39-220ENST00000613444 FHL5Q5TD97 284 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms