RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 PPIL1Q9Y3C6 166 aa13.34□□□□□ -0.27
COL6A1-207ENST00000612273 FABP12A6NFH5 140 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 PITPNM1O00562 1244 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 IL7P13232 177 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 HSD3B1P14060 373 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 HSD3B2P26439 372 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 CD79BP40259 229 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 PNLIPRP1P54315 467 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 HEPACAMQ14CZ8 416 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 ZNF805Q5CZA5 627 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 PDZK1Q5T2W1 519 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 PXYLP1Q8TE99 480 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 TMEM80Q96HE8 168 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 GFM1Q96RP9 751 aaKnown RBP13.33□□□□□ -0.27
COL6A1-207ENST00000612273 GPA33Q99795 319 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 RANGRFQ9HD47 186 aaPredicted RBP13.33□□□□□ -0.27
COL6A1-207ENST00000612273 FKBP14Q9NWM8 211 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 CNIH4Q9P003 139 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 CLCA3PQ9Y6N3 262 aa13.33□□□□□ -0.27
COL6A1-207ENST00000612273 HEPACAM2A8MVW5 462 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 UGT2B17O75795 530 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 CSF2RAP15509 400 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 ETV5P41161 510 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 HTR3AP46098 478 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 ETV1P50549 477 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 RORCP51449 518 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 EEF1A2Q05639 463 aaKnown RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 LASP1Q14847 261 aaKnown RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 CRB2Q5IJ48 1285 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 LINC00299Q6ZSB3 139 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 VN1R5Q7Z5H4 357 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF547Q8IVP9 402 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 PLA2G15Q8NCC3 412 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 TREX2Q9BQ50 279 aaPredicted RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 FNDC11Q9BVV2 318 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 ZCCHC3Q9NUD5 404 aaKnown RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 CRNNQ9UBG3 495 aaPredicted RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 KLK4Q9Y5K2 254 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 FRMPD3Q5JV73 1810 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 GSAPA4D1B5 854 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 CENPXA8MT69 81 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 NPIPB8E9PQR5 432 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 PDPK1O15530 556 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 OSMP13725 252 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 ATP6V1E1P36543 226 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 CCT3P49368 545 aaKnown RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 PODNL1Q6PEZ8 512 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 TECPR1Q7Z6L1 1165 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 RAB43Q86YS6 212 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 ANKRD53Q8N9V6 530 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 TMEM246Q9BRR3 403 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 HDHD5Q9BXW7 423 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 CCDC59Q9P031 241 aaKnown RBP13.33□□□□□ -0.28
COL6A1-207ENST00000612273 SPATA7Q9P0W8 599 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 SLC23A2Q9UGH3 650 aa13.33□□□□□ -0.28
COL6A1-207ENST00000612273 TMPRSS11DO60235 418 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 EPHX1P07099 455 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 ST8SIA6P61647 398 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 RBBP4Q09028 425 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 C1DQ13901 141 aaKnown RBP13.32□□□□□ -0.28
COL6A1-207ENST00000612273 GPR19Q15760 415 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF79Q15937 498 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 TUBA3EQ6PEY2 450 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 C12orf40Q86WS4 652 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 TFGQ92734 400 aaPredicted RBP13.32□□□□□ -0.28
COL6A1-207ENST00000612273 TIFAQ96CG3 184 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 LMLNQ96KR4 655 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 TMED9Q9BVK6 235 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 THSD1Q9NS62 852 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 TMEM39AQ9NV64 488 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 GUCY1B2O75343 617 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 HOXB3P14651 431 aaPredicted RBP13.32□□□□□ -0.28
COL6A1-207ENST00000612273 CD72P21854 359 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 SOX18P35713 384 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 RFX2P48378 723 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 HNRNPFP52597 415 aaKnown RBP13.32□□□□□ -0.28
COL6A1-207ENST00000612273 EIF4HQ15056 248 aaKnown RBP13.32□□□□□ -0.28
COL6A1-207ENST00000612273 GPAT3Q53EU6 434 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 SNAP47Q5SQN1 464 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 KIAA1161Q6NSJ0 714 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 SLC9B2Q86UD5 537 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 C17orf64Q86WR6 236 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 MMAAQ8IVH4 418 aaKnown RBP13.32□□□□□ -0.28
COL6A1-207ENST00000612273 OR4K5Q8NGD3 323 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 ZG16BQ96DA0 208 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 RAD9AQ99638 391 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 CDCA4Q9BXL8 241 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 PLA2G12AQ9BZM1 189 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 NTNG1Q9Y2I2 539 aa13.32□□□□□ -0.28
COL6A1-207ENST00000612273 FAM47E-STBD1D6RA91 191 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 HYAL3O43820 417 aaPredicted RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 MRPS14O60783 128 aaKnown RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 APEX1P27695 318 aaKnown RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 CSTF2P33240 577 aaKnown RBP eCLIP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PCBP3P57721 371 aaKnown RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 RPS25P62851 125 aaKnown RBP13.31□□□□□ -0.28
COL6A1-207ENST00000612273 PHC2Q8IXK0 858 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 LAS2Q8IYD9 372 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 CPA6Q8N4T0 437 aa13.31□□□□□ -0.28
COL6A1-207ENST00000612273 OR6T1Q8NGN1 323 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms