RNA–Protein interactions for RNA: ENST00000580127.5

MKS1-209, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5

Gene MKS1, Length 843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-209ENST00000580127 NIPBLQ6KC79 2804 aaeCLIP16.47■□□□□ 0.23
MKS1-209ENST00000580127 MPDZO75970 2070 aa16.47■□□□□ 0.23
MKS1-209ENST00000580127 ANKHD1Q8IWZ3 2542 aaKnown RBP16.47■□□□□ 0.23
MKS1-209ENST00000580127 A6NNC1 897 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 K7EPI3 171 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 SAP18O00422 153 aaKnown RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 SH3BGRLO75368 114 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 RFPL3SP0C7P2 107 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 GDF1P27539 372 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 GALNSP34059 522 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 GCKP35557 465 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 TIMP3P35625 211 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 GP5P40197 560 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 TMED10P49755 219 aaKnown RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 NRG3P56975 720 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 PCDH1Q08174 1060 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 E2F2Q14209 437 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 FASTKD3Q14CZ7 662 aaKnown RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 DAZAP2Q15038 168 aaPredicted RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 GRTP1Q5TC63 336 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 CYP20A1Q6UW02 462 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 TBC1D1Q86TI0 1168 aaPredicted RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 MYLK4Q86YV6 388 aaPredicted RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 LACC1Q8IV20 430 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 ZCCHC7Q8N3Z6 543 aaKnown RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 DIO2Q92813 273 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 TP53INP1Q96A56 240 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 ZNF597Q96LX8 424 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 ALPK1Q96QP1 1244 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 RBBP8Q99708 897 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 OR51B5Q9H339 312 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 ZNF358Q9NW07 568 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 LYARQ9NX58 379 aaKnown RBP16.46■□□□□ 0.23
MKS1-209ENST00000580127 CRIM1Q9NZV1 1036 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 SPRR3Q9UBC9 169 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 FREM3P0C091 2139 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 ZFHX3Q15911 3703 aa16.46■□□□□ 0.23
MKS1-209ENST00000580127 C2orf92A0A1B0GVN3 265 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 TUBAL3A6NHL2 446 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SYCE1LA8MT33 242 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SUPT3HB4E1H0 165 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 EIF3HO15372 352 aaKnown RBP eCLIP16.45■□□□□ 0.22
MKS1-209ENST00000580127 PROM1O43490 865 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 CDH16O75309 829 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SUPT3HO75486 399 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 WISP3O95389 354 aaPredicted RBP16.45■□□□□ 0.22
MKS1-209ENST00000580127 GSTA2P09210 222 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 CRABP2P29373 138 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 TRPC1P48995 793 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 HERVK_113P63132 956 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 ERVK-8P63133 956 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 TNFRSF17Q02223 184 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 DDX39BQ13838 428 aaKnown RBP16.45■□□□□ 0.22
MKS1-209ENST00000580127 NTRK2Q16620 822 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 FBXL19-AS1Q494R0 122 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 LIPJQ5W064 366 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 GRHL2Q6ISB3 625 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 C3orf62Q6ZUJ4 267 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 OR10G3Q8NGC4 313 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 ERVK-6Q9BXR3 956 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 WWTR1Q9GZV5 400 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SLC6A15Q9H2J7 730 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 ALG9Q9H6U8 611 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SNX15Q9NRS6 342 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 RNF14Q9UBS8 474 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 ERVK-19Q9WJR5 959 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SNX24Q9Y343 169 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 TSC22D4Q9Y3Q8 395 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 SAR1BQ9Y6B6 198 aa16.45■□□□□ 0.22
MKS1-209ENST00000580127 CHCHD2Q9Y6H1 151 aaPredicted RBP16.45■□□□□ 0.22
MKS1-209ENST00000580127 GOSR1O95249 250 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 SSTR1P30872 391 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 CEACAM8P31997 349 aaPredicted RBP16.44■□□□□ 0.22
MKS1-209ENST00000580127 MASP1P48740 699 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 DUSP8Q13202 625 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 SPRED3Q2MJR0 410 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 C6orf163Q5TEZ5 329 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 CCDC91Q7Z6B0 441 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 CDC20BQ86Y33 519 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 CTAGE3PQ8IX95 158 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 HUS1BQ8NHY5 278 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 MBD6Q96DN6 1003 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 SECISBP2Q96T21 854 aaKnown RBP16.44■□□□□ 0.22
MKS1-209ENST00000580127 SAYSD1Q9NPB0 183 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 TRMT1Q9NXH9 659 aaKnown RBP16.44■□□□□ 0.22
MKS1-209ENST00000580127 PLEKHA6Q9Y2H5 1048 aa16.44■□□□□ 0.22
MKS1-209ENST00000580127 CCDC189A1A4V9 331 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 LTA4HP09960 611 aaKnown RBP16.43■□□□□ 0.22
MKS1-209ENST00000580127 SLC35E2BP0CK96 405 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 SLC35E2P0CK97 266 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 EPXP11678 715 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 KRT15P19012 456 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 EPORP19235 508 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 ENDOUP21128 410 aaKnown RBP16.43■□□□□ 0.22
MKS1-209ENST00000580127 OPRM1P35372 400 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 SLC37A1P57057 533 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 KEAP1Q14145 624 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 SETDB1Q15047 1291 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 TOMM20Q15388 145 aa16.43■□□□□ 0.22
MKS1-209ENST00000580127 ZKSCAN8Q15776 578 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms