RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 EFNA1P20827 205 aaPredicted RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 MAPK1P28482 360 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 OTX2P32243 289 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 FEN1P39748 380 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 ASMTP46597 345 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ALDH9A1P49189 494 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ATP4BP51164 291 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 XKP51811 444 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 NME5P56597 212 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 SLC13A2Q13183 592 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 MAD2L1Q13257 205 aaPredicted RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 HEPACAMQ14CZ8 416 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 TERF2Q15554 542 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 PRICKLE4Q2TBC4 344 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ZNF628Q5EBL2 1059 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 SPANXN4Q5MJ08 99 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 EXOSC6Q5RKV6 272 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 NXNQ6DKJ4 435 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 PAOXQ6QHF9 649 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 FAM111BQ6SJ93 734 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 SPATA21Q7Z572 469 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 CPEB2Q7Z5Q1 589 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 PARP9Q8IXQ6 854 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ST13P4Q8IZP2 240 aaPredicted RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 OR4K14Q8NGD5 310 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 OR8J2Q8NGG1 315 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 CDC26Q8NHZ8 85 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 PSMA8Q8TAA3 256 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ZNF721Q8TF20 911 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 EXOSC8Q96B26 276 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 KLHL29Q96CT2 875 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 MTERF3Q96E29 417 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 AMDHD1Q96NU7 426 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ELAC2Q9BQ52 826 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 SEMA4CQ9C0C4 833 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 MYLK2Q9H1R3 596 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 GLIPR2Q9H4G4 154 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 PRORYQ9H606 182 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ANKRA2Q9H9E1 313 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 SAR1AQ9NR31 198 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 MAT2BQ9NZL9 334 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 FBXL4Q9UKA2 621 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 UTS2RQ9UKP6 389 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 G3BP2Q9UN86 482 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 EIF3LQ9Y262 564 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 MRPS33Q9Y291 106 aaKnown RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 SPTA1P02549 2419 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 SMG1Q96Q15 3661 aaKnown RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 SAGE2PA6NJ88 616 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ZNF891A8MT65 544 aaPredicted RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 A8MUA0 341 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 CLDN4O14493 209 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 PCDH17O14917 1159 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 MAN1A2O60476 641 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 GUCY1B2O75343 617 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 NME6O75414 186 aaPredicted RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 CEACAM4O75871 244 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 DNAJB5O75953 348 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 CBX7O95931 251 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 IGHEP01854 428 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 TROVE2P10155 538 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS35-211ENST00000569950 CAPN3P20807 821 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 PRPS1L1P21108 318 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 TLX1P31314 330 aaPredicted RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 GALNSP34059 522 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 DGKQP52824 942 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ARFIP2P53365 341 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 SOX8P57073 446 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 OR4D2P58180 307 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 SLC26A5P58743 744 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 MRPS35P82673 323 aaKnown RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 FUT7Q11130 342 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 CHAF1BQ13112 559 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 UBAP2LQ14157 1087 aaKnown RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 RCAN2Q14206 197 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 TLR1Q15399 786 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ELAVL1Q15717 326 aaKnown RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 GSTA3Q16772 222 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 DCAF10Q5QP82 559 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 METTL21CQ5VZV1 264 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 OR4F3Q6IEY1 312 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 PAPD4Q6PIY7 484 aaKnown RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 ACAD11Q709F0 780 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 NDUFAF7Q7L592 441 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ZNF551Q7Z340 670 aaPredicted RBP8.66□□□□□ -1.02
VPS35-211ENST00000569950 TREML1Q86YW5 311 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 CLECL1Q8IZS7 167 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ARMC10Q8N2F6 343 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 KIF2BQ8N4N8 673 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ZNF615Q8N8J6 731 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 OR7G2Q8NG99 324 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 OR9A2Q8NGT5 310 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ZNF675Q8TD23 568 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ELP5Q8TE02 316 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 CCT8L2Q96SF2 557 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 EFHD1Q9BUP0 239 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 NUDT9Q9BW91 350 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 FAIM2Q9BWQ8 316 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 NMUR2Q9GZQ4 415 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ADAP2Q9NPF8 381 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms