RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 LDAHQ9H6V9 325 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 LYARQ9NX58 379 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 TNFRSF10DQ9UBN6 386 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ERVK-19Q9WJR5 959 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 RNF11Q9Y3C5 154 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 GLOD5A6NK44 160 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 FOXE1O00358 373 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 OR10H2O60403 315 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 SIX3O95343 332 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 FAM58BPP0C7Q3 252 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 GALNSP34059 522 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 MAN2A2P49641 1150 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 SLC37A1P57057 533 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ZNF267Q14586 743 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 UAP1Q16222 522 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 RTL6Q6ICC9 239 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 CYP20A1Q6UW02 462 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 B3GNT6Q6ZMB0 384 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 SLC29A4Q7RTT9 530 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 DND1Q8IYX4 353 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 OR10Q1Q8NGQ4 319 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 UCN3Q969E3 161 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 LRRC1Q9BTT6 524 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 PROK2Q9HC23 129 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 RYDENQ9NUL5 291 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 CPSF2Q9P2I0 782 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 ACAD8Q9UKU7 415 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 FAM215AQ9Y5M1 114 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 CHCHD2Q9Y6H1 151 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 INTS1Q8N201 2190 aaKnown RBP14.81□□□□□ -0.04
CLN3-229ENST00000567963 FOXO6A8MYZ6 492 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 HCN1O60741 890 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 CLDN9O95484 217 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 FBXO45P0C2W1 286 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 RFPL3SP0C7P2 107 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 GLI4P10075 376 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 NR2F6P10588 404 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 SERPINB3P29508 390 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 PHBP35232 272 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 PIK3CGP48736 1102 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 SERPINB8P50452 374 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 KCNJ2P63252 427 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 PRAMEF20Q5VT98 475 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 RNF111Q6ZNA4 994 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 DMRTC2Q8IXT2 367 aaPredicted RBP14.81□□□□□ -0.04
CLN3-229ENST00000567963 PLD6Q8N2A8 252 aaKnown RBP14.81□□□□□ -0.04
CLN3-229ENST00000567963 FBXW8Q8N3Y1 598 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 SARAFQ96BY9 339 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 CDK15Q96Q40 435 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 GAL3ST4Q96RP7 486 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 WWTR1Q9GZV5 400 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 NOL11Q9H8H0 719 aaKnown RBP14.81□□□□□ -0.04
CLN3-229ENST00000567963 WDR41Q9HAD4 459 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 ZFP64Q9NPA5 681 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 CNIH4Q9P003 139 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.81□□□□□ -0.04
CLN3-229ENST00000567963 NCKAP5O14513 1909 aa14.81□□□□□ -0.04
CLN3-229ENST00000567963 NINQ8N4C6 2090 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 TRGV5A0A0B4J1U4 118 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 OR6C76A6NM76 312 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 OR7A17O14581 309 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 WDR1O75083 606 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 AIFM1O95831 613 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 GBAP04062 536 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 CLPSP04118 112 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 HOXD4P09016 255 aaPredicted RBP14.8□□□□□ -0.04
CLN3-229ENST00000567963 SLC35E2P0CK97 266 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 ENDOUP21128 410 aaKnown RBP14.8□□□□□ -0.04
CLN3-229ENST00000567963 EBPQ15125 230 aaKnown RBP14.8□□□□□ -0.04
CLN3-229ENST00000567963 TECRLQ5HYJ1 363 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 UBAP2Q5T6F2 1119 aaKnown RBP14.8□□□□□ -0.04
CLN3-229ENST00000567963 WLSQ5T9L3 541 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 C8orf74Q6P047 294 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 NUDT13Q86X67 352 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 FAM13CQ8NE31 585 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 OR10G3Q8NGC4 313 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 OR52B6Q8NGF0 335 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 ATP6V1E2Q96A05 226 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 PHF21BQ96EK2 531 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 VPS11Q9H270 941 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 ACSS3Q9H6R3 686 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 EXO5Q9H790 373 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 ZNF703Q9H7S9 590 aaPredicted RBP14.8□□□□□ -0.04
CLN3-229ENST00000567963 ZNF358Q9NW07 568 aa14.8□□□□□ -0.04
CLN3-229ENST00000567963 BOKQ9UMX3 212 aaPredicted RBP14.8□□□□□ -0.04
CLN3-229ENST00000567963 A0A0G2JNJ9 132 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 PGRMC2O15173 223 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 ZFP36L2P47974 494 aaKnown RBP14.79□□□□□ -0.04
CLN3-229ENST00000567963 NTRK2Q16620 822 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 CDH24Q86UP0 819 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 RELL1Q8IUW5 271 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 LRRC25Q8N386 305 aaPredicted RBP14.79□□□□□ -0.04
CLN3-229ENST00000567963 PTGR2Q8N8N7 351 aaPredicted RBP14.79□□□□□ -0.04
CLN3-229ENST00000567963 SERPINI1Q99574 410 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 NTMT1Q9BV86 223 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 FUT8Q9BYC5 575 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 ACKR4Q9NPB9 350 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 ALKBH4Q9NXW9 302 aa14.79□□□□□ -0.04
CLN3-229ENST00000567963 NINJ2Q9NZG7 142 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms