RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TRIB2Q92519 343 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ADIPOR1Q96A54 375 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 EID2BQ96D98 161 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 C5orf30Q96GV9 206 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ZNF486Q96H40 463 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 OXNAD1Q96HP4 312 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 NECTIN4Q96NY8 510 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SERPINB12Q96P63 405 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 TEFMQ96QE5 360 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 HIST1H2AAQ96QV6 131 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 TCEAL7Q9BRU2 100 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 KRTAP2-2Q9BYT5 123 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 WWP1Q9H0M0 922 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 PABPC3Q9H361 631 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 GOLPH3Q9H4A6 298 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 PLEKHA4Q9H4M7 779 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 PDZD7Q9H5P4 517 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SLA2Q9H6Q3 261 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 NARFLQ9H6Q4 476 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 GPN1Q9HCN4 374 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 PPANQ9NQ55 473 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 GSN-AS1Q9NRJ2 163 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 POT1Q9NUX5 634 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ZNF701Q9NV72 531 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 TMEM248Q9NWD8 314 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 HIF1ANQ9NWT6 349 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SDHAF2Q9NX18 166 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 COA4Q9NYJ1 87 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 EIF3KQ9UBQ5 218 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 LPAR3Q9UBY5 353 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ZNF212Q9UDV6 495 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 CHRNA9Q9UGM1 479 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 STEAP1Q9UHE8 339 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 GLS2Q9UI32 602 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 UTS2RQ9UKP6 389 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 TRPC5Q9UL62 973 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 ACSL5Q9ULC5 683 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 PPIEQ9UNP9 301 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 MGAT4BQ9UQ53 548 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 PRG3Q9Y2Y8 225 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 ASB4Q9Y574 426 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 FAM135BQ49AJ0 1406 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 POGZQ7Z3K3 1410 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PBRM1Q86U86 1689 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 TRBV2A0A0J9YWF9 115 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 A0A1W2PRB8 838 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 FAM92AA1XBS5 289 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 C5orf60A6NFR6 353 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ASB14A6NK59 587 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 C4orf47A7E2U8 309 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 LOC110117498-PIK3R3F6TDL0 507 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 AGPSO00116 658 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 HS3ST1O14792 307 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CHP2O43745 196 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 VPS26AO75436 327 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 STX11O75558 287 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GATBO75879 557 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 DCTN3O75935 186 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GLCEO94923 617 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 OR6B1O95007 311 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SIX3O95343 332 aaPredicted RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 FGBP02675 491 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 S100A8P05109 93 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CRHP06850 196 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GUSBP08236 651 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 THRAP10827 490 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ADRB3P13945 408 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ZNF26P17031 533 aaPredicted RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 DCTDP32321 178 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CD80P33681 288 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 MPIP34949 423 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PTGER1P34995 402 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GGT5P36269 586 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PGM1P36871 562 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SRP9P49458 86 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 TPMTP51580 245 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 DAOAP59103 153 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ESRRGP62508 458 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 B4GALNT1Q00973 533 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GUCY2DQ02846 1103 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CFHR3Q02985 330 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PUDPQ08623 228 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 AIMP2Q13155 320 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 SNTB1Q13884 538 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 IRF3Q14653 427 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 TRAM2Q15035 370 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 TRIP6Q15654 476 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 SGCBQ16585 318 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 UGT3A2Q3SY77 523 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 TRIM60Q495X7 471 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ATP13A5Q4VNC0 1218 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ESCO2Q56NI9 601 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 MANEALQ5VSG8 457 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 KHDRBS2Q5VWX1 349 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 RNLSQ5VYX0 342 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 TMEM65Q6PI78 240 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ABHD12BQ7Z5M8 362 aaPredicted RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 LHFPL4Q7Z7J7 247 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ZDHHC21Q8IVQ6 265 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 RNF113BQ8IZP6 322 aaKnown RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms