RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 LRIT1Q9P2V4 623 aa12.15□□□□□ -0.46
SNX1-211ENST00000560829 P2RX2Q9UBL9 471 aa12.15□□□□□ -0.46
SNX1-211ENST00000560829 MAGED1Q9Y5V3 778 aaPredicted RBP12.15□□□□□ -0.46
SNX1-211ENST00000560829 SNRNP200O75643 2136 aaKnown RBP12.15□□□□□ -0.47
SNX1-211ENST00000560829 PRAMEF27A3QJZ7 478 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 EIF4E1BA6NMX2 242 aaKnown RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 C5orf58C9J3I9 102 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 hCG_2039718K7EN88 272 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 PLOD2O00469 737 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 E2F6O75461 281 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 PDE9AO76083 593 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 C9P02748 559 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 OPN1SWP03999 348 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 BCHEP06276 602 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 IFI6P09912 130 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GNSP15586 552 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 MATN1P21941 496 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 DNAJA1P31689 397 aaKnown RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 CAPGP40121 348 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ARRB1P49407 418 aaPredicted RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 XKP51811 444 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ADARB1P78563 741 aaKnown RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 SIM1P81133 766 aaPredicted RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 EPS8Q12929 822 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 BNIP3Q12983 259 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GK3PQ14409 553 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 SHBQ15464 509 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 DEFB110Q30KQ9 67 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 NIPAL1Q6NVV3 410 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 TMEM107Q6UX40 140 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 FAM92BQ6ZTR7 304 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 USP51Q70EK9 711 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 LGI4Q8N135 537 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 DHRSXQ8N5I4 330 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 OR9A2Q8NGT5 310 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GAB3Q8WWW8 586 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 RAB8BQ92930 207 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ZDHHC12Q96GR4 267 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ZNF696Q9H7X3 374 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 BCL2L10Q9HD36 194 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 PCDHGB5Q9Y5G0 923 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 TMEM247A6NEH6 219 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ZNF860A6NHJ4 632 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 A6NHS1 94 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ASNA1O43681 348 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 KIF1CO43896 1103 aaKnown RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 TNFAIP8O95379 198 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 SNAP29O95721 258 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 HMGN2P05204 90 aaKnown RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 CTSBP07858 339 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 OR12D1P0DN82 309 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 THRBP10828 461 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 FPR1P21462 350 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 MC3RP41968 323 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GPR3P46089 330 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GFERP55789 205 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 RAB38P57729 211 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 OLR1P78380 273 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 MYBPC1Q00872 1141 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 SLC35F3Q8IY50 421 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 HS3ST5Q8IZT8 346 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 SPPL2AQ8TCT8 520 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GEMIN6Q8WXD5 167 aaKnown RBP12.14□□□□□ -0.47
SNX1-211ENST00000560829 TANKQ92844 425 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 GIMAP5Q96F15 307 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ZNF347Q96SE7 839 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 ANKHQ9HCJ1 492 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 NDUFAF4Q9P032 175 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 PDP2Q9P2J9 529 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 SUSD2Q9UGT4 822 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 RAB23Q9ULC3 237 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 PLCL2Q9UPR0 1127 aa12.14□□□□□ -0.47
SNX1-211ENST00000560829 USP34Q70CQ2 3546 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 IGHV1OR21-1A0A087WYE8 117 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 PRAMEF25A6NGN4 478 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 LAMTOR5O43504 91 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 SLITRK5O94991 958 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 MFN2O95140 757 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 ALPPL2P10696 532 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 CPMP14384 443 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 GLB1P16278 677 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 DHPSP49366 369 aaPredicted RBP12.13□□□□□ -0.47
SNX1-211ENST00000560829 MAN2A2P49641 1150 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 ARHGDIAP52565 204 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 SKP1P63208 163 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 FAM53BQ14153 422 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 NDUFA9Q16795 377 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 INAVAQ3KP66 663 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 GARNL3Q5VVW2 1013 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 PRAMEF8Q5VWM4 474 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 PRAMEF7Q5VXH5 474 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 MAML2Q8IZL2 1156 aaPredicted RBP12.13□□□□□ -0.47
SNX1-211ENST00000560829 OR2L13Q8N349 312 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 NUP43Q8NFH3 380 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 OR5T3Q8NGG3 340 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 OR5D16Q8NGK9 328 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 APOBEC4Q8WW27 367 aaKnown RBP12.13□□□□□ -0.47
SNX1-211ENST00000560829 EDAQ92838 391 aa12.13□□□□□ -0.47
SNX1-211ENST00000560829 TGM7Q96PF1 710 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms