RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 SOX11P35716 441 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 GSTM5P46439 218 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 CD97P48960 835 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 CLCN2P51788 898 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 ERVK-8P63133 956 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 BIKQ13323 160 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 ZNF267Q14586 743 aaPredicted RBP13.36□□□□□ -0.27
USP3-205ENST00000557884 PRSS53Q2L4Q9 553 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 IL23RQ5VWK5 629 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 ANKRD26P1Q6NSI1 321 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 ISLR2Q6UXK2 745 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 CRLF3Q8IUI8 442 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 WDR75Q8IWA0 830 aaKnown RBP13.36□□□□□ -0.27
USP3-205ENST00000557884 LIX1Q8N485 282 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 APCDD1LQ8NCL9 501 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 MORN4Q8NDC4 146 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.36□□□□□ -0.27
USP3-205ENST00000557884 CNRIP1Q96F85 164 aaPredicted RBP13.36□□□□□ -0.27
USP3-205ENST00000557884 VMP1Q96GC9 406 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 PELOQ9BRX2 385 aaKnown RBP13.36□□□□□ -0.27
USP3-205ENST00000557884 DEFB126Q9BYW3 111 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 MIEF1Q9NQG6 463 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 PLA2G3Q9NZ20 509 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 EXO1Q9UQ84 846 aaKnown RBP13.36□□□□□ -0.27
USP3-205ENST00000557884 ERVK-19Q9WJR5 959 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 ENTPD4Q9Y227 616 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 ZNF780BQ9Y6R6 833 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 MED13Q9UHV7 2174 aa13.36□□□□□ -0.27
USP3-205ENST00000557884 SPTA1P02549 2419 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 HDAC3O15379 428 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 ATP8B1O43520 1251 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 PRKNO60260 465 aaPredicted RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 CT62P0C5K7 136 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 CSNK2A2P19784 350 aaPredicted RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 MAPK1P28482 360 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 GPR143P51810 404 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 MFAP5Q13361 173 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 LTB4RQ15722 352 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 ABHD17BQ5VST6 288 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 FAM47EQ6ZV65 393 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 IKBIPQ70UQ0 350 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 GALNT12Q8IXK2 581 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 PIP4P2Q8N4L2 257 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 SLC5A8Q8N695 610 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 C7orf57Q8NEG2 295 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 ADCY4Q8NFM4 1077 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 OR1N1Q8NGS0 311 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 CKAP2Q8WWK9 683 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 SENP5Q96HI0 755 aaPredicted RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 FBXL20Q96IG2 436 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 ZNF681Q96N22 645 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 BBS4Q96RK4 519 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 NPAS2Q99743 824 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 CDCP1Q9H5V8 836 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 EPS8L2Q9H6S3 715 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 LIN28AQ9H9Z2 209 aaKnown RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 MEAF6Q9HAF1 191 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 CXorf21Q9HAI6 301 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 MED4Q9NPJ6 270 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 SLC35C2Q9NQQ7 365 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 GIMAP4Q9NUV9 329 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 COPS7AQ9UBW8 275 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 TEKT2Q9UIF3 430 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 PPIEQ9UNP9 301 aaKnown RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 EIF3LQ9Y262 564 aaKnown RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 WBP11Q9Y2W2 641 aaKnown RBP13.35□□□□□ -0.27
USP3-205ENST00000557884 PCDHGB7Q9Y5F8 929 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 CSAG2Q9Y5P2 127 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 SCN2AQ99250 2005 aa13.35□□□□□ -0.27
USP3-205ENST00000557884 GOLGA8QA0A0J9YX86 632 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 GOLGA8OA6NCC3 632 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 GOLGA8NF8WBI6 632 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 SDHDO14521 159 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 DPM1O60762 260 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 PTGR1Q14914 329 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 SPRED3Q2MJR0 410 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 NADK2Q4G0N4 442 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 ACER2Q5QJU3 275 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 C6orf163Q5TEZ5 329 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 H3F3CQ6NXT2 135 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 HSDL2Q6YN16 418 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 C16orf47Q6ZP98 133 aaPredicted RBP13.34□□□□□ -0.27
USP3-205ENST00000557884 MAVSQ7Z434 540 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 RPS19BP1Q86WX3 136 aaKnown RBP13.34□□□□□ -0.27
USP3-205ENST00000557884 CCDC116Q8IYX3 515 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 BEST3Q8N1M1 668 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 LRRC25Q8N386 305 aaPredicted RBP13.34□□□□□ -0.27
USP3-205ENST00000557884 RBMXL3Q8N7X1 1067 aaKnown RBP13.34□□□□□ -0.27
USP3-205ENST00000557884 TEX19Q8NA77 164 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 ZNF721Q8TF20 911 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 ZNF354BQ96LW1 612 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 MAGEB18Q96M61 343 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 BRINP2Q9C0B6 783 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 REEP4Q9H6H4 257 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 WDR55Q9H6Y2 383 aaPredicted RBP13.34□□□□□ -0.27
USP3-205ENST00000557884 STMN3Q9NZ72 180 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 EHD3Q9NZN3 535 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 LUZP4Q9P127 313 aa13.34□□□□□ -0.27
USP3-205ENST00000557884 TRPC5OSA6NMA1 111 aa13.33□□□□□ -0.28
USP3-205ENST00000557884 SLCO1B7G3V0H7 640 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms